Gene detail

Detailed information of KAJ8416541.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8416541.1	INTERFERON REGULATORY FACTOR	AAFF_1.1_unplaced_6	9153614	9183340	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00358290

ATGGATTATACATCACAGAGCACATTCAAAAACAGCTTTGAAGAAAATCCAAGCCATTTCCAGTACAGCAGGGGCTATAAACACATTGGTAAATGTCTCATTATCAACAATGGAAGATTCTCTGTGATGGGCCCACGGCACGGCACAGAGGTGGACGAGGAGTTACTGCGAAAGACCTTTGAATCCCTGGGGTTCACTCTGCATATAGAGAACAATCTGTCCGTCAAAGACATGCTGAGGGTACTCCAGACAGTGTCAGAAGAAGACCACGGAGAGAGGGCATGCTTCATCTGTGTGCTACTCAGCCACGGCGGCGAAGGTACCATTTTTGGAACAGACAGACCGGTTCCTCTCCAGGAGCTGACCTCTTTCCTCACTGCAGAGAGATGCCCCAGTCTAAAGGGGAAGCCCAAACTATTCTTCATCCAGGCTTGCAGGGGAGATGAGTACGACTGTGGTGTTGAAACAGATTCGGTGGAGGAAGAACAGTCGGTTCAAATGTCTGAGATTCCAGAGGGAGATTTCCTGTGCGGCTACTCCACAACTCAAGGCTATTTCTCATGGAGAAACCCCAAAACTGGCTCGATTTACATCAAGTATCTGTGTGAAATGCTGAAGCAGCACAGAAGTCTGGAAATAACAAAGATCCTGACCAGAGTCAACCACAGGGTGGCACTGGATTTTGACGGTGCGAGGATTGCTGCATTTGAAAGGGCGTATTCTGCTATATTACAGGTCACCATGCCGGTGGAGAGAATGCGAATGAGGCCATGGTTGGAGGAGCAGATAAACTCAGATAAAATACCAGGACTGAAATGGGTTAACAGAGAGAAAAGGATCTTTCAGATTGCCTGGATGCATGCAGCTCGACATGGATGGGATGTGGAAAAAGATGCTCCTTTGTTTAGAAACTGGGCGATTCATACAGGAAAATATCAACCAGGGGTGGACAAACCCGACCCAAAGACATGGAAAGCCAATTTCCGCTGTGCCATGAACTCCCTGCCTGATATTGAGGAGGTCAAGGACAAGAGCATTAAGAAAGGAACCAATGCCTTCAGGGTTTACAAAATGCTGTTGCCATCCGAGAGACCCACAAAGAAAGGCAAGAAAAGGggtgaaaaagaagaaaaaacaaagGTGGAGCACAGGCCACCTTTGCGAAAGAGCAGTAAGGGGACGGCGCTGGTGAAAGTGGAAAACATGGTGGACAGCACGTTGCTAACAGAGACCCACCGCCTGGCCCCCCGCAGCCCGCTGAATGATCACCTGATCATCAGCGACCTGCCGGACGTGTGCCAGACCATTGAAGTGATGACGGAGAACGAAGACCAGTCGGTCAGCTCCAGCCACCCCTACCCACTCCAAATCTCGCCCGTCTCCTCATACGGAGACAGTGACACAGATAGCGTTCATAGCGAAGAGGACACTAAGGAGGGCTTGCGTGGGTTGTGGAATCTGTGTCCGGTTGGCGGAAATAACTCTGTGCTGAAGCTGCCCAGCATGGCCACCTTTGTCACGTCAGGGAAAACCAACTTCAAGGTGACCAGCAGCCAGGAGGAGAGTCCACTCATCGCCTACAACATCATGCCCTGGAACGTCCCACCCATCCAGCCACCCGCCCTCCCGGGCACCTCCggccacaccccctcccacGAGACCCGCGCCAGCGTCATCAAGAAGACCCCCGACATCTCAAAGTCCACCGTCAAAACATGCTGATCCAGGGCCAGCCCGCGTTTAAGTCTTCTGGGACCGGCCCGGAGCTGGAAGGGCCTGATTGGGGTGGAACTGTCTGCAGGACACTTGGTCCTCCCTCACCGTTGCTGCCCCCTATCGGTGGGAGGCCTTGGCCTTGTGGACGAGAGCAAGTTTCAGCAGTACTTACAGTCTCAAatgcagggagagagactgGATTGTGTCAGACACCTGCTGGTTCTACTGTCCTCGCTGTGTAAAGAGTGGCTCATCTGCATAATTGCAGTAGGCTTCTGCACCTTACTGGAAGCACATATACTGTGCCAATGTGGTTTCTGTGGCACTTCTGGGTCATTTGGTTATGGTGATGTAATCGCTGAGGTTGTAATGGGTGAACCTTGCCTAATCTCAGTCTTTAACTGGACTGTGAAAACTCCCGTATCTCTGAGGAGGTATCGTGTGATGGAAGAGGAAGTGACATAATGCACTCACTGAAACAAGTGTAGAGACTTTAACCTTTTCCTGAAGcaattttttgtatttcttataAAGGGAACATTTTATCCAAGGTGAATtctcagtttgtttgtttttttaactgaaataagGAACATTGTGACATTATTGAATTCACATGGCACATGTGTGATGATTTTAACCATCCAatagcactgtatatatatgaatatatacatgACAATGCCTGTGCTTATGtttatgcgtgtttgtgtataggtatatgttaatatataatacacacatgtattaataaatgtgtatttcCATACACATACATAAGCAGATATTAATCCTGTGGAtcattaaatatgcaaatcTTAATGAAGATTCTTTTTCTAATTTAGATTATTCCTGTAAAATTGTACTCCGAAATAAActtgttttgaatatttttccATGTTGATGTGTTGGCTTACAATCAGTCACATGAGGCAGGAGTAAGAGCATCGTCTCAGCTGGCCCTGCTCTCTCTCAACTTGGCCCTGAATATAATTAAACCGTCCTTTGGATGAAAtgttaaactgaggtcctgacccactgtggtcattaaagatgcCGTGGCTCTTTTTgaaagagtaggggtgttaaccccAGTGCCCTGGTGAAATTCCCCCAAAACTTGGTCtttacatctggccacctaatcatcccctacATATCACTGGCTACATAATCCCTGTATTACCAACCCCTTTGATTCCCCAAGTCATTACTGCAAAAgagaattgagttctcagttgacctaccaaGCTATGTaaaagttaaaataataaatagaaaGTACAAACCCAAAGATAACAAGTTAATCTAGACTTTatctgtgactggcagtgaggTAAAAGGTTAGATTTATTTTCACGTTAGGAGAGCCCCGTAGATGAAACGTTTCACGGCAGCAGTAAAAGTACTGTCCAGAGCTAAATAGACTCCATAACTCTGACATTCCTTAACCCAGAATGACTTTATAGTAGAACAAGTAGAACAAACACATGGTGGACACCCCTTGCCTAAGACAGAAAAATTTGATTGTTTTAgatatttttactgacattATTTTAATCCtatttattgtaaaatattcactcattttgaatttgatgcctgCAACACGTTCCAAAAAAGCTGGGACAGGGGCATGTTTACCACGGTGTTACATCACCTTTCCTTTTAACAACACTCAGTAAGCGTTTGGGAACTGAAGACACTAATTGTTGAATTTTTGTAGGCaaaattttttcccattcttgcTCGATGTACGACTTCAGTTGCTCAACAGTCAGGGGTCTCCGTTGTCGTATTTTGCGCTTCATAATGCGCcatacattttcaatgggagacaGGTCTGGACTGCAGGCAGGCGAGTCTAGTACCCAC

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	IRF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00605	IRF	Interferon regulatory factor transcription factor	Domain	Interproscan
PF00656	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001309	Domain	Peptidase C14, p20 domain	Interproscan
IPR001346	Domain	Interferon regulatory factor, DNA-binding domain	Interproscan
IPR002138	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan
IPR011600	Domain	Peptidase C14, caspase domain	Interproscan
IPR015917	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR016129	Active_site	Peptidase family C14A, His active site	Interproscan
IPR029030	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR033139	Active_site	Peptidase family C14A, cysteine active site	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11949	INTERFERON REGULATORY FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0002376	Biological Process	immune system process	Interproscan
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-