Gene detail

Detailed information of KAJ8416065.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8416065.1	NUCLEAR PORE COMPLEX PROTEIN NUP133	AAFF_1.1_unplaced_7	3231422	3261982	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00380870

ATGTTCTCCCCCCGTTCCAACACTGGTTCGGCTCGTAGGCAAAACACAAGGGTGGCTGGTAGAAAGGGCCTAGCCACACCGACAGGGCTCCTATTTTCCCCGGTTCGTAGATCGTCTTTGACAGCGAGGGCGACTCCCACGAGATTGCAGAGCCAGGCTGCGGCAGAGGCGGTCAACTTTGATGTACAAACATTTGGGTCCTCGCTGCCTGTCAAAGTCATGGAAGCTTTGACAATGGCAGATGCGGATGATCAGATCTCGGTGAAGGTCGAGGAGACTGGATGGGCGTGGATGGTGTGTGGGGAGAGTTTGATTGTCTGGAAGATCGGCCAGACGGCTGTGGCCAAGCTTTCAGTCTGTAAAGGCCTCCAGTTGCCCCCCAGTGAGTTTACCTACTCCGCAGATCTGATTGCCATATCGTCTCAGAGCCCCGTGGAAACTGCTCCCATTCAGTCCATTTCGGTCATGGCAGTGTCCCCCGAGGGAACGGTGCGATACTGGCCCAGTCTGGCTCACGAGGGCACGTACACAGAGACCGTGGTGGACCTGGGGGAAAACCTGTGCAACTTCCTCACTGCTGTCAAGGGGCACAGTTTCGTCCTCTCCTCCTATAAGAACCAGCTTCTGCGCGTGGGAGCGGATGGATCCGGGAAGCTCCAGCAGAGGCCGCTGCAGCAGGGGCAGGGGGTCCTTTCTGGGATTGGCCGCCGTGTCTCCAGCCTCTTTGGCATCCTGGCCCCGCCTACCAATGTCACTCTGCACAGCCTGCTGTGGGTCGGGAAGACGGGCTGCCTCTACACCCTGACCAGCTGCAGCCTGGACAAgtgggaggtggaggagggctCGGAGTACCCTGTGTTCAGCTGGGACACCAGCAGGACCCTCAGGGACAGTATCTCTGATGCCATCTGGGGCTCGGAAAGCAACTATACAGAAATAAAGGAGGGGGTGAACGTGACATACGTGGACATGCAGCTTGGACAGGATGGGCTGGTGATCCTGGCAGCAGCCTGGCACCCATTGGATGCCCCCTGTCTGGCCTACTTCTGCCTGCTCACCCTGCTCGATAATGGCCCCAACATCGCCGACGAAGTCTCTGTGGAAGTGACCAAGCACAACCCCCCTTTTCAGACGGAGGACGACCTGCAGGCTTTGCGTCTGGTGCTGCCCCGCTCCTCCGGCTCGGTGGCCTACCTGTACGGTGAAGACCTGGTGTTCGCCTGCTCCAGCGACCCCAGCAGAGCCAGCCTGCCCCAGGAGAAGATCTCCTTCAGCTCCCCTGGGGACCGTCTCTTGGGCGCTGGCTGCTGTGCAGACTTGCCGGTGTTCTTCTCGCAGAACAGCGGCCTGGTGGCGGTGGTCGCCCGGGAGAGTGCCTCGATGCTGCCCGAAACCATGGAGgactctctctgctcctctctcgcTGGGGCGGTGCCAGAGGGGTCCGCCATGGACAGTTCATTAAGGCTGGAGACCGTCGCTCAGGAAGACAAAACCAAGCTCCTGAAAGCAGCTTTCTTGCAGTATTGCAGGAAAGATCTGCTGGGGGCCCAGACAATGGCCGATGAGCTCTTCCCCCCTGACACGGAGGTGGAGACTGACCCGGAGCTGGACGCGGCAGTCATACAGATTAACCTGGACCTGGTGAACGACTACCCCGCCTCTGACCCGCGGTGGGCGGAGTCTGTGCCCGAAGagAGCGCTGGATTCTCCCTCACATCCTTGATTCTCCTCCACCAGCTAGAGGACAAGATGAAAGCCCACTGCTTCTTCATGGACTTCCTGCAGCAGGTCGGCCTGCTTGAGCGCCTTGCCATAGTGACGGTCCGCTCTGCTCCCATGGCAACGCGCCTGCTGTTGTGCGAGCACGCTGAGAAGCTCTCGGCCGCCATCGTGCTGAAGCACCACCACACCAAACTGCCTGAGCTCACCAACAGGGCCATCCTTGCCGCCCTGAGGAAGAACCACACCATCGTCCCACCCAGCCTCACCCCCGCCGATGTCTTCTTCAGAGAGGTGTCCCAGATCTCTGCCATCTTCGAGTGCCTGCTGGAAGAGGAGGAACGCTCACTGAAGGATCACCCGCTAGACTCGGTGGAGTGGGCAGAGGTGGTGGTCAACGTCAACAACATCCTCACGGACATGCTAAAGGCAGCCAGCCAATACCGGGAGACCAAGGCCTCTCTTTACAGAGCTGCCGAAAGCAGCCGGACTGAACCGGAGTTCATTCCCTGGACAGCCACCAGCGGCCCCGGGGGCGTGCGGACAGTCATCGCCGGGCAGCACGAGGTCATAATGAAGGTGGTGCTCCCGCACGCGGACTCGGAGCTGCGCGGCTCCCTGAACGAGCAGCTGGTGGCGCTGTTGGACGCGTACCTCGGGGGCTACGTGGCGCAGCTGAGCTCCCTGAGTCGGCCGAGTCAGCAGGAGCGCTACAGCAGCCTGGAGCTGGAGTACACGCAGAAACGCGCCGAGGTGCTCGCACCCTTCTTGGAGCTGGGCCAGTATCAGTGGGTCGCTTCTCTGGCGGAGAAATACTGCGACTTCGACATCCTGGTGCAGATGTGTGAGCAGACCGACAACCAGAGCCGCCTGCAGTGCTACATGACCAAGTTTGCAGACCAGAACTTTTCGGACTTCCTGTTCCGCTGGTACATGGAGAAGGGCAAACGGGGGAAGTTGCTGTCCCAGCCCGTCGCCCAGCACCAGCAGCTGGCCAGCTTCCTGCAGGCCCACGAGCATCTCAGCTGGCTGCACCAAATCAACGTCCACGACTTCCAGAAGGCTCACCAGACCTTACAGGGTCTGGCCAACATGGAGACGCGCTACTTCACCAAGAGGAGGACCCTGCTGGCGCTCAGCAAGCTGACGGCCCTGACGGCCGACTTCCCCAACACACTGCTGCAGAGGACGCTGGACGACATTTTGGAACAGGAGCGTTTCCTCCTGCACCAGGAGACTCTCCCAAAGCAGCTTCTGGAAGAGAAGCAGCTGAATGCTGACACCATGCCCTTGCTCAGCGCCCACAACCTCATCAACCTGTACATCTGCGAGGACAACAGAAGGGCCAACGAATATGATTTCAAAAAAGCCCTGGACCTGCTGGAGTACATTAAAGAGGAGGAAGAAGTGGACCTTGAAGCCCTGAAGTGTGAAATATTCTGCAAGGCCCTCAAAAAAGACGACTGGTCTTCTGCTGACGGGAGCGATGACCCTTTGGAGGCAGCTAAGGACAGCATTTTTGTGAAGATTCTGCAGAAGCTCATTCAAGAAGGTGTTCAGCTTCAGAGTTATTTGCCAGACATTAAAGACCTCCTTCAGTGTGTGGAGTTGGAACGGCTTAAATCGAAACCTTCCTTTGAGTTTTTTCTGAGGGCCAACTATGAACATTACCTGCAAGAGCAGACAGGCAGCACCGAAGAACCCACCAAAATGTGCGACGACGACGAGACTACCGCTTTGGTGTGCGACAATGGCTCAGGCCTGGTGAAGGCTGGCTTCGCCGGCGACGATGCCCCAAGGGCTGTCTTCCCCTCCATCGTCGGTCGCCCTCGTCACCAGGGTGTGATGGTGGGTATGGGACAGAAGGACTCTTATGTAGGTGATGAAGCTCAGAGCAAGAGGGGTATCCTCACTCTGAAGTACCCCATCGAGCACGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGCGTGGCCCCCGAGGAACACCCCACCCTGCTCACAGAAGCCCCCCTGAACCCCAAGGCTAACCGTGAAAAGATGACCCAGATCATGTTTGAGACCTTCAACGTGCCAGCTATGTATGTGGCCATCCAGGCTGTGCTGTCCCTGTACGCATCTGGCCGTACCACTGGTATTGTGCTGGACTCCGGCGATGGCGTCACCCACAACGTCCCCATTTATGAGGGTTACGCCCTACCCCACGCCATCATGCGTCTGGATCTGGCTGGTCGTGATCTGACCGATTACCTCATGAAGATCCTGACCGAGCGTGGTTACTCTTTCGTTACAACCGCCGAGCGTGAGATCGTGCGTGACATCAAGGAGAAGTTGTGCTATGTGGCTCTGGACTTCGAGAACGAGATGGCGACCGctgcctcttcctcttccctggAGAAGAGCTACGAGTTGCCTGACGGCCAGGTCATCACCATCGGTAATGAGCGTTTCCGTTGCCCAGAGACCCTCTTCCAGCCTTCCTTCATCGGTATGGAGTCTGCTGGTATTCACGAGACCGCTTACAACAGCATCATGAAGTGCGACATTGACATCAGGAAGGACCTGTACGCCAACAACGTGCTCTCCGGCGGGACCACCATGTACCCTGGTATCGCTGACCGTATGCAGAAGGAGATCACTGCCCTGGCTCCCAGCACAATGAAAATCAAGATCATTGCCCCACCTGAGCGTAAATACTCCGTATGGATCGGTGGCTCCATCCTGGCTTCCTTGTCCACCTTCCAACAGATGTGGATCAGCAAGCAGGAGTACGATGAGGCAGGCCCCAGCATTGTCCACCGCAAATGCTTCTAA

Transcript

AAFF_T00380870

GCTAATTGCTCTTAGTACCGTGTCCACAGCCAGGTTCTATGGAAAATCGTTCAAGAACCTCAACAATTGTGAATTTTGGAAATGacatttctcacgtttataacgaGATAAATGTCACGAAAATTGgctgagaattaagcgagttacagtagttTATATCAGGGGAAGTCTACATCTTTCAATACACgcacgtttgtttagacgcggatcttgcccgcctcaATATGACGTATATACCATGCGCCCACCGTCTCACATGGTATGCACGTCATGCTGTGCGTCTTTAGAGAGATCTCCGAACAGGCGGCATTTTCACAACAGGTAGGAGAAAACAAGAAAATCGCGTTTGCAGGAGCCATAGACGGATTGTGAGCGAAGAGAGCCCACAATGTTCTCCCCCCGTTCCAACACTGGTTCGGCTCGTAGGCAAAACACAAGGGTGGCTGGTAGAAAGGGCCTAGCCACACCGACAGGGCTCCTATTTTCCCCGGTTCGTAGATCGTCTTTGACAGCGAGGGCGACTCCCACGAGATTGCAGAGCCAGGCTGCGGCAGAGGCGGTCAACTTTGATGTACAAACATTTGGGTCCTCGCTGCCTGTCAAAGTCATGGAAGCTTTGACAATGGCAGATGCGGATGATCAGATCTCGGTGAAGGTCGAGGAGACTGGATGGGCGTGGATGGTGTGTGGGGAGAGTTTGATTGTCTGGAAGATCGGCCAGACGGCTGTGGCCAAGCTTTCAGTCTGTAAAGGCCTCCAGTTGCCCCCCAGTGAGTTTACCTACTCCGCAGATCTGATTGCCATATCGTCTCAGAGCCCCGTGGAAACTGCTCCCATTCAGTCCATTTCGGTCATGGCAGTGTCCCCCGAGGGAACGGTGCGATACTGGCCCAGTCTGGCTCACGAGGGCACGTACACAGAGACCGTGGTGGACCTGGGGGAAAACCTGTGCAACTTCCTCACTGCTGTCAAGGGGCACAGTTTCGTCCTCTCCTCCTATAAGAACCAGCTTCTGCGCGTGGGAGCGGATGGATCCGGGAAGCTCCAGCAGAGGCCGCTGCAGCAGGGGCAGGGGGTCCTTTCTGGGATTGGCCGCCGTGTCTCCAGCCTCTTTGGCATCCTGGCCCCGCCTACCAATGTCACTCTGCACAGCCTGCTGTGGGTCGGGAAGACGGGCTGCCTCTACACCCTGACCAGCTGCAGCCTGGACAAgtgggaggtggaggagggctCGGAGTACCCTGTGTTCAGCTGGGACACCAGCAGGACCCTCAGGGACAGTATCTCTGATGCCATCTGGGGCTCGGAAAGCAACTATACAGAAATAAAGGAGGGGGTGAACGTGACATACGTGGACATGCAGCTTGGACAGGATGGGCTGGTGATCCTGGCAGCAGCCTGGCACCCATTGGATGCCCCCTGTCTGGCCTACTTCTGCCTGCTCACCCTGCTCGATAATGGCCCCAACATCGCCGACGAAGTCTCTGTGGAAGTGACCAAGCACAACCCCCCTTTTCAGACGGAGGACGACCTGCAGGCTTTGCGTCTGGTGCTGCCCCGCTCCTCCGGCTCGGTGGCCTACCTGTACGGTGAAGACCTGGTGTTCGCCTGCTCCAGCGACCCCAGCAGAGCCAGCCTGCCCCAGGAGAAGATCTCCTTCAGCTCCCCTGGGGACCGTCTCTTGGGCGCTGGCTGCTGTGCAGACTTGCCGGTGTTCTTCTCGCAGAACAGCGGCCTGGTGGCGGTGGTCGCCCGGGAGAGTGCCTCGATGCTGCCCGAAACCATGGAGgactctctctgctcctctctcgcTGGGGCGGTGCCAGAGGGGTCCGCCATGGACAGTTCATTAAGGCTGGAGACCGTCGCTCAGGAAGACAAAACCAAGCTCCTGAAAGCAGCTTTCTTGCAGTATTGCAGGAAAGATCTGCTGGGGGCCCAGACAATGGCCGATGAGCTCTTCCCCCCTGACACGGAGGTGGAGACTGACCCGGAGCTGGACGCGGCAGTCATACAGATTAACCTGGACCTGGTGAACGACTACCCCGCCTCTGACCCGCGGTGGGCGGAGTCTGTGCCCGAAGagAGCGCTGGATTCTCCCTCACATCCTTGATTCTCCTCCACCAGCTAGAGGACAAGATGAAAGCCCACTGCTTCTTCATGGACTTCCTGCAGCAGGTCGGCCTGCTTGAGCGCCTTGCCATAGTGACGGTCCGCTCTGCTCCCATGGCAACGCGCCTGCTGTTGTGCGAGCACGCTGAGAAGCTCTCGGCCGCCATCGTGCTGAAGCACCACCACACCAAACTGCCTGAGCTCACCAACAGGGCCATCCTTGCCGCCCTGAGGAAGAACCACACCATCGTCCCACCCAGCCTCACCCCCGCCGATGTCTTCTTCAGAGAGGTGTCCCAGATCTCTGCCATCTTCGAGTGCCTGCTGGAAGAGGAGGAACGCTCACTGAAGGATCACCCGCTAGACTCGGTGGAGTGGGCAGAGGTGGTGGTCAACGTCAACAACATCCTCACGGACATGCTAAAGGCAGCCAGCCAATACCGGGAGACCAAGGCCTCTCTTTACAGAGCTGCCGAAAGCAGCCGGACTGAACCGGAGTTCATTCCCTGGACAGCCACCAGCGGCCCCGGGGGCGTGCGGACAGTCATCGCCGGGCAGCACGAGGTCATAATGAAGGTGGTGCTCCCGCACGCGGACTCGGAGCTGCGCGGCTCCCTGAACGAGCAGCTGGTGGCGCTGTTGGACGCGTACCTCGGGGGCTACGTGGCGCAGCTGAGCTCCCTGAGTCGGCCGAGTCAGCAGGAGCGCTACAGCAGCCTGGAGCTGGAGTACACGCAGAAACGCGCCGAGGTGCTCGCACCCTTCTTGGAGCTGGGCCAGTATCAGTGGGTCGCTTCTCTGGCGGAGAAATACTGCGACTTCGACATCCTGGTGCAGATGTGTGAGCAGACCGACAACCAGAGCCGCCTGCAGTGCTACATGACCAAGTTTGCAGACCAGAACTTTTCGGACTTCCTGTTCCGCTGGTACATGGAGAAGGGCAAACGGGGGAAGTTGCTGTCCCAGCCCGTCGCCCAGCACCAGCAGCTGGCCAGCTTCCTGCAGGCCCACGAGCATCTCAGCTGGCTGCACCAAATCAACGTCCACGACTTCCAGAAGGCTCACCAGACCTTACAGGGTCTGGCCAACATGGAGACGCGCTACTTCACCAAGAGGAGGACCCTGCTGGCGCTCAGCAAGCTGACGGCCCTGACGGCCGACTTCCCCAACACACTGCTGCAGAGGACGCTGGACGACATTTTGGAACAGGAGCGTTTCCTCCTGCACCAGGAGACTCTCCCAAAGCAGCTTCTGGAAGAGAAGCAGCTGAATGCTGACACCATGCCCTTGCTCAGCGCCCACAACCTCATCAACCTGTACATCTGCGAGGACAACAGAAGGGCCAACGAATATGATTTCAAAAAAGCCCTGGACCTGCTGGAGTACATTAAAGAGGAGGAAGAAGTGGACCTTGAAGCCCTGAAGTGTGAAATATTCTGCAAGGCCCTCAAAAAAGACGACTGGTCTTCTGCTGACGGGAGCGATGACCCTTTGGAGGCAGCTAAGGACAGCATTTTTGTGAAGATTCTGCAGAAGCTCATTCAAGAAGGTGTTCAGCTTCAGAGTTATTTGCCAGACATTAAAGACCTCCTTCAGTGTGTGGAGTTGGAACGGCTTAAATCGAAACCTTCCTTTGAGTTTTTTCTGAGGGCCAACTATGAACATTACCTGCAAGAGCAGACAGGCAGCACCGAAGAACCCACCAAAATGTGCGACGACGACGAGACTACCGCTTTGGTGTGCGACAATGGCTCAGGCCTGGTGAAGGCTGGCTTCGCCGGCGACGATGCCCCAAGGGCTGTCTTCCCCTCCATCGTCGGTCGCCCTCGTCACCAGGGTGTGATGGTGGGTATGGGACAGAAGGACTCTTATGTAGGTGATGAAGCTCAGAGCAAGAGGGGTATCCTCACTCTGAAGTACCCCATCGAGCACGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGCGTGGCCCCCGAGGAACACCCCACCCTGCTCACAGAAGCCCCCCTGAACCCCAAGGCTAACCGTGAAAAGATGACCCAGATCATGTTTGAGACCTTCAACGTGCCAGCTATGTATGTGGCCATCCAGGCTGTGCTGTCCCTGTACGCATCTGGCCGTACCACTGGTATTGTGCTGGACTCCGGCGATGGCGTCACCCACAACGTCCCCATTTATGAGGGTTACGCCCTACCCCACGCCATCATGCGTCTGGATCTGGCTGGTCGTGATCTGACCGATTACCTCATGAAGATCCTGACCGAGCGTGGTTACTCTTTCGTTACAACCGCCGAGCGTGAGATCGTGCGTGACATCAAGGAGAAGTTGTGCTATGTGGCTCTGGACTTCGAGAACGAGATGGCGACCGctgcctcttcctcttccctggAGAAGAGCTACGAGTTGCCTGACGGCCAGGTCATCACCATCGGTAATGAGCGTTTCCGTTGCCCAGAGACCCTCTTCCAGCCTTCCTTCATCGGTATGGAGTCTGCTGGTATTCACGAGACCGCTTACAACAGCATCATGAAGTGCGACATTGACATCAGGAAGGACCTGTACGCCAACAACGTGCTCTCCGGCGGGACCACCATGTACCCTGGTATCGCTGACCGTATGCAGAAGGAGATCACTGCCCTGGCTCCCAGCACAATGAAAATCAAGATCATTGCCCCACCTGAGCGTAAATACTCCGTATGGATCGGTGGCTCCATCCTGGCTTCCTTGTCCACCTTCCAACAGATGTGGATCAGCAAGCAGGAGTACGATGAGGCAGGCCCCAGCATTGTCCACCGCAAATGCTTCTAAATCCATCACCACCGCCTGCATCTGGCTCAGGAACCAAGTTGTAGCAGACCGCATTGTTGTCATGGGACAGCTCTgtacaaatgtaattttgtaaCAATGTGTTGTTACTTGATGAAAATGCTGCAAACAACATCAAAGAACAACATCAAAGAGAAGAAAGAGTAAATGCCATGTTATCCAACATgcgaatgtaaaatgtacataaatattaatttattgaagTCTATCATCGGGTATTTTGAGAACAGTCTCTGTTATGGAAAAAACCAAAAGGGCAGCAGATGTTGTTTCCTCTGTTTATCCGAAGCTAGCTTGGAAGTACATCAATCTTGCTGAAGACAACAACAAAGCAATCAGATATCATCGGGGAAATAAATTTTTCAActattttcaaa

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00022	Actin	Actin	Family	Interproscan
PF03177	Nucleoporin_C	Non-repetitive/WGA-negative nucleoporin C-terminal	Family	Interproscan
PF08801	Nucleoporin_N	Nup133 N terminal like	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004000	Family	Actin family	Interproscan
IPR004001	Conserved_site	Actin, conserved site	Interproscan
IPR007187	Domain	Nucleoporin, Nup133/Nup155-like, C-terminal	Interproscan
IPR014908	Domain	Nucleoporin, Nup133/Nup155-like, N-terminal	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020902	Conserved_site	Actin/actin-like conserved site	Interproscan
IPR037624	Family	Nuclear pore complex protein Nup133-like	Interproscan
IPR043129	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13405	NUCLEAR PORE COMPLEX PROTEIN NUP133	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000972	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0031080	Cellular Component	nuclear pore outer ring	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-