Gene detail

Detailed information of KAJ8413899.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8413899.1	TRANSFORMING GROWTH FACTOR ALPHA	AAFF_1.1_unplaced_14	3471553	3481958	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00064970

CGACGTCATTCTTCTAGCCGCGCACTCCGGATCCTATTGGACAGGTGGGACATACCTGAAGCGTTCTCCCAGAGCACGGCGAAGAGTGACGCAGCTGCCGGCCGCTTGTCAAAACGCAACCTCACACACGCCGCAATGAAAGGCGTAAAATCGGGCTTTCTCCTGCCATTCTATGGTCTGCTGCTTCTGTCTAACAATTTGGTGGAATCCACGAACCCCTCTCCCACCTGCGGCCCAGGCCCTGCTCAACATCAGgtcAGATGACTGCCGTCGCCCTGGTGACCACGCCCCAGGTGGAGAGAGTGATGATCCAAAAATGTAACTCCAGCATGGATGGCTACTGTTTCCATGGAGAGTGCATGTTTCTACTGGACCTCGATGAGCACCACTGCAGGTGTCAGCAGGGTTATTCGGGGAACAGGTGTGCTCACCTGGCTCTGGTGATTCAGCCACTGACTCAGGAGAGCCTAATACTCACAGTGGTGTGTGTGGCTCTGGCTGTCCTGGGCATCACTGGGGCTGCCTACTTGTTCTACAAAtgGTGTAAGCGAAGCAGGGGTCCACCTGGAGAGAAGCAGTACCAGGAGGTGCAGATGGTGTGATTGGCAGCGTGATTGGTGGTTTGAGTTGGGGTGTGATTAGAGGCTTCATTGACAGGGTGATTAACAGTCTGATTGGCTTGATGGACAATTGTACTCAGTCTCCTTGTTTGGAAGAATATGGTAAAAAGTGTGCTCATAAAGATGAGAGGTATTTATGAAAAGGTATTTAAAGCCCTGCTCTATGAAAGCAAggttggaggtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgtgtgtgtgtgaataaattCTGAATTTAGTGACTTCATGTTGACTACAAGCAGCATTTTCATCTCCACTGCACATGTTTTGTTTCtatttcaatgttaaaaatgatTATCATTGTTTGTAATGTACATATGGATATTTATAATATGATCATTCTTGCAACTGCAGTGTTCAATTCAGTGTCGGAAGAAGAGGGAATCTAGGGGATTTTAAAAGAAAGGTTATTATTCTAGAATAtctattaaatgtatttttttataattgaaTGTTGATCATTGTTGATTTTTTGCAaggggaatacaaaaacatgaAGAGGAATTAGATAACATTTGGTTaagctaaaacatttttttttttaaacttccgAAAATGTAGCCTAAATCTGCGCAGATAGTGATCTTTACTGTAACAATGGGAGAAGAAAGCAACTGCAAACAGCCCGTGGACGTGTGGAGGACAAACGCCCAGGATGCGTAATGTGAAGAAAAATACAACTGAGAAATGATTTTTTAATCAAGCTAAATAAATGGCTGATAGTTAGATATTCATATGGGTGGAACCACCATGTGCTGTCCATCGCTGGCTTGTTTGAACCAGGCAAAAGATTCATAAAATATAacacaggaaaacacaatgattggtttaaatctGTGAGTCCCTGGTAGAATGTGGTTCTTCCATTTTTGGGTTCAGCTCATAGAGTTATAGAACTCCTAGAGGGCGCGATTCTCATCTTTTAAAGGTCAGCTGCATTCTATAGATAAATTATACTATTATTCTATTGCCCCAGAAACAGGTCAAAGTGAGTCCCAAAGTCTAGTCCCACCAGTTGACAACTTCACAATGCCTCATTCAAGTACACCCTCAAGATGTTTTATAACTCTGTTGTTCTGTCTAACTCACTTTTCTGGTGGTGCATTCTGACTGCAGGTGGCAGTACTTTCATTTTGGCACCTCTGCCAGCATGGGCGACACAGGCTCTGCATACACTCCTGCCATTTTCCAAAACCACCAGGAGGGGGAGgtgtttattattgtttcatttgaCCTGTGAAAATCTTATTTTATTCATGGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10740	TRANSFORMING GROWTH FACTOR ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005154	Molecular Function	epidermal growth factor receptor binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0007173	Biological Process	epidermal growth factor receptor signaling pathway	Interproscan
GO:0008083	Molecular Function	growth factor activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0008284	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0045840	Biological Process	positive regulation of mitotic nuclear division	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-