Gene detail

Detailed information of KAJ8413540.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8413540.1	PARTNER AND LOCALIZER OF BRCA2	AAFF_1.1_unplaced_15	1380639	1389903	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00080470

CCCACCCTCCCACCtacaacacactgcacactcagaCAAGACCCCTTATCTGCTGTGAGCCCAACGGAGACACACAGCCACCCTCTCTTTCAAACACACCTGGCACAGATGTACACGATCAGTCCCAGAATCCACCAGGTGCTGCAGTGAACGAGGCAGACCCACCCCCGGCAGAGGCGCCTGTGGAGGGGGACCAGTGTGCGGCTCTTGCGCAGTTGTCTGCCCCTAAGCCTCCGCTGACCGATTCGCTCTCCTCCTTGCTCTGTTGCAGTGGAAGTGTCTCTCCTCTGTGCCCTTCCCCGCTCACTCTCCCCTATGGGGCACAGGAGTCATCACTCCTCCCCTTTTCCTCAGGGGGCGGAGCGTGCCGACGCCCGGTCACCCAAAGCAAGCGGCACCGACTCACGGCCTCTCCTTTCACCAGGGGAGAGGACGAAACGTGACGGAGTTGACATGGCCGCCAGTGGAAAGGTCACACCCTCCGTCCCCCCGAAACACAAGGAGGGTGATTCTCCCCAGGGCTCTCGGGCCTCCCCTCTCGCCCTGCCTCTCACGGGGTCAGGTAGACCGCACCGCACAGACACGGAGGAGAGAACGGCCACGCCCCGCATTGGGGAGGATGACTTGCTCGATGGTGGCGTGGAGCCACACAAGCCAGAACAGCGCTCTCTCAAGGCCCCGTCTCAGGAGTCCACTGGGCACTCGGGCTGGCCGGCCACACCGGGCCCCGGCGTCCTGCCGTCCTCCTCGCTGATGTCAGAGTGCGGAGATAAAGACCTGGACAGCTACTTCACAGACTCTGCCTGGTCCCGCGCGGCGCGGACATCACCTGAGTCCGGGGATAGCTCACCGGGACAGGACCCCGCAGAGGGGCGGCTGGACATACCCCCGCCGTCGCCACACACTGTGCAGGAGGGTCCTTCCTCCAGCAGCCTGAAACTCACACACGTGCTGAAGGCTCCTGCAGGCCGGTGCCTGGTGGACGTATGCAGCGTGTATGGAGCCGAGGGCTGGTGTGTGGTGACAGCAGAGGAGTGggcagtgagtgtgtggggagagagctCCCCCCAACACTGGAGCCTGCTTCACACCTGGACCTTCACTGAGCACCCAGTCGTCGCCCTGCTCTCCGTGCCCGACGCCCCCAGCCTAATCTGCGTCACTCTAGGCAAACTGGAGATCAGAGAAGCCAGGGTCCTGTCTTGTGTCAGTGCTGAGGGATGGCTCTCCCAGTTGGTGCTGTGTACAGGGGAGACCACGAACGTGCTCACACTGACAGGGGAGGGCAGGCTGGAGGATTCACTTACCCTGGTTTCTCCTGGGCAGTCTGTCCAGGCTCTGGCTGCTGTGGATGGACAAAAGGATGCTCTTATTGGCTCCACGGGCTCTAGCCACCTTGTCCTCTGGAATATGAGGACTGGGCATCTGCTGCAGAGGTTTTCTCTGGGGGAGAGTCTTTCAGGAACCGTGTGTCTCAGAGGATACTCACAGAGCGGGGTGCTGTTTGTGCTGCTGCAGTGCCACTTTCTCCATAACCTTAACCAAGAGGAAGGGGCGCCTTTCTCTCTGATCGCCACCAACCCCGTCACTGCTAGATCTGTCCTGATTCGCCAGCTGACCCAGCCCGCAGTGCGTGGGGAGGTTCACAGATGGGGACGTGTGGGAATCGTCGGTGGTGGCGGTCTTCCGGTCGGGAGCCGTGGCGGTGTGGGACCTCAGGGACACCATAAAACAGGGCAGACCGAGCTGACATCGGTGGCCAGCTCACTGCTTCAGCCCTGTAGGCAGTATGGAGATTTGCCACCTCTCACTCTTGAAACCATCAAGGATCGTGTCCTTTATGTGCTGAAGTTGTACGACAAGATCAGCCCAGAGAAActtGAAACCTCATCTCACTTTATGAAAGATTTGGGGTTGGACAGCTTGGACCAGGTGGAGATAATTATGGCCATGGAAGATGAATTTGGGTTTGAGATCCCAGATGCAGAGGCTGAGAAGCTGATGTCTCCACAGGAGATTGTACAGTACATTGCTGAAAAGAAGGATGTGTATGAATGAGGAACCTCTTACCTACAGTGTATGTGTCACGCACCCTTCCATGTGGCCTGGACCTGATGCAGATGGagctttatttcagttttcacaTTGTGTGTTGTTCATGGCTTGCAGTGtctactgtacatttatttactgCTGTACTTGTATTTTGATTATCACAAAATGGCTAAGGCTTGTAATGGGCTTTTAgggaaaacaatcaaataataaaatgttatattctGTGTTGAacttcaatgtgtttaaatggtGGGTTCCGAGATGGTCAGGTCAGATGGGCTTGAATAGGTTTATGTCCCCACCTGGTGGTTGCATAGTATAGTTGCAGCTCTGCCTGTGAAAGATGGCCCCCAGTAACACTCACCTCGACCAAGattagattaaaaaaattaaaaaagttttaTGGCCTTTTCATTATCCTAGAGCCAAACGGCAGAGCAGTAATGGTGAATTGGTGATAAAGCAGCATGTGCTTGGAGCCTGCCATGTTAACGAGAGGGGAGACATGTCCGCTGTGTGTCACAGCCGCTGgctcttctccccccccccgcctacCCAGAGCAGCCTGCAAACGGTCATGTCCTGTCTGAATCTCCCTCGCACATCCCTCTACCTTTTACTGCTACTCTCTGATGTAAAACGGTCTCCCGCACAGTAAACAATCTGGTTTATACCCTCCAACCTTGAGTGTTTAAGGGGAAGTTTCAAGttcctttttttcccacatTGAGCTGTATTCATAATGGGTTTGTAAAATTATATTCCCTTGCCTGTATGCATGCGAAGTCAGGATTTCAAGGACTAAATAGTTATCCATCTGAGTTTGTGGTTGACCATGATGGAGGGTGAGAAAGGTCGCTGGTTGTATGTAAGCTGTTATGAATAAACTGAAATTTTGTATTTAACTATTCCAGAGTGTGCAGTCATGTTTTGGACATGCGTGTATTCTGTATGTCcccattaaaacatattttacccCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00550	PP-binding	Phosphopantetheine attachment site	Domain	Interproscan
PF16756	PALB2_WD40	Partner and localizer of BRCA2 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003231	Family	Acyl carrier protein	Interproscan
IPR006162	PTM	Phosphopantetheine attachment site	Interproscan
IPR009081	Domain	Phosphopantetheine binding ACP domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR031920	Domain	Partner and localiser of BRCA2, WD40 domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036736	Homologous_superfamily	ACP-like superfamily	Interproscan
IPR042417	Family	Partner and localizer of BRCA2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14662	PARTNER AND LOCALIZER OF BRCA2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0006633	Biological Process	fatty acid biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-