Gene detail

Detailed information of KAJ8413499.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8413499.1	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED	AAFF_1.1_unplaced_15	628460	632968	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00080060

TCTTGTATTTTGACGGAGAGGGAAAATCAGACGAGGAGTGAGTAAACATGCAGGACTTGATTGCTACAGTTGATCATATTAAATTTGACCTGGAGATTGCTGTGGAGCAGCAGTTGGGAGCTCAGCCTCTACCGTTCCCAGGAATGGACAAATCTGGGGCGGCGGTGTGTGAGTTTTTCCTGAAAGCTGCTTGTTTAAAAGGTGGGATGTGTCCATTCCGTCACATCAGTGGGGAGAAAACGGTAGTTTGTAAACATTGGCTCAGAGGACTGTGCAAAAAAGGGGACCAATGCGAGTTTCTGCACGAATATGACATGACCAAGATGCCAGAGTGCTATTTCTACTCCAAATTTGGGGAGTGCAGTAACAAAGAATGTCCATTCTTACACATTGACCCTGAGTCCAAGATCAAAGACTGTCCCTGGTATGACAGAGGATTCTGTAAACATGGTCCAGATTGCAGACACAGGCATACTCGAAGGGTCATCTGTATCAACTACTTGGTCGGCTTTTGTCCAGACGGCAGGACTTGTAAATTCATGCATCCACGGTTTGATCTGCCCATGGGAACAACTGAGCAACCGCCCCTTCAACAGCAAATCCAGACCCAGCAAAAGATTAACTTTCAACCAACAAATATGaggtcatcatcatcactgaTCCAGTTAACCAACCCTAAAGTTAACTCCAACCATTACCAGCACCACCCGAGGATGCCACAAGTCATTGGTGCAATGCATTCACACAACAACATGACAGGCCACAGAGGGCCCCGCCCATTGGAGCAGGTCACGTGTTACAAGTGTGGTGAGAAGGGACACTACGCCAATAAATGTACAAAGGGACACCTGGCTTTCCTAAGTGGACAGTAACTACATATCCTCAGATGTGCAGATGTGTTCTCAGCCTGGATGGATGGCAGGAAGTCGGTGCACAGGTGCCGGTGGGCTTCAACTGTTCCCTTTAAAAGTTCTGATGACCACGCATTGTAGACTGCATCCACCCTTAAGTCTCTATCCCTGCAGAATAATAAACCAATCACCTCACTGGAGTGGAGTTAAAGGGAACATTAaaaaagtgtgagtgtgtgagagaaaataTAGTGGTTGAAGTGGAGATtaagaagagtgtgtgtgtgtgtgagatgatagagatatatatatatatatacacacacacacacgcgcacaccctTCGACctgctggtttttttttttttaaatggcagtgTACCATACAGGTGTATACCATACCAGCCCACTTTaaccactgtatgtatatacagtaccctccaaaatgattcacaccaaTGATAAAGATGGGTAAAGGCAGCtgtttaaatacaattttgtttaaaaagtagTATGTTTTAATATTAGAATAatctcacaattattcacacattttcagtaCTTTTGTGCATTTCAGCGtgaatctcataaaacactgttGCAAAAGAGaaatgtcttcccagctctcctgcagctaTTCCCAGACAACAGTGAGTtgatgggattgaggtctggacactgggcaggccaggtcattagtttgagttcaCTGCATCTTATGAACAACCTATTCCCTAGAGCTCTATTCAGATTTTTTACAAACTTCATTCTTGCAGTATACCAGGATAATCGCCTCCAagaattgtcattttcattcatttgacaACATTAAATAAACTACTAGGTCTTCTCcatgaataaatgtaattataaaatACAAGAACTGCTCTTTATTAGGCATCATGAGACTCCCATTTAGAATGCAATCTTGGTGATTATTCCTTCGTATAATTGCCAAACGTTTTGCAGCAAAACAAATATGAGTATAAGGCAAAGTACAGGGTATCCATGATTCAATTCCAGACAATTGAACCGAATGCTGTGGACATACAGATTTTTTGCATAGACCGTCATCttgaaaatgataaatattgcattttgtaCAGGCCggtacagaaaatgtatttgggtATGTTTTGACATAACTTTAAGGTTTATTGCAGTAAAGGAACAATGTGTAATAAAttacttttgtattt

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-CCCH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan
PF15663	zf-CCCH_3	Zinc-finger containing family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR041686	Domain	Zinc-finger CCCH domain	Interproscan
IPR045348	Family	CPSF complex subunit CPSF4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23102	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0098789	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-