Gene detail

Detailed information of KAJ8412497.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8412497.1	SMAD	AAFF_1.1_unplaced_19	4196381	4206944	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00128330

CTACTGTTATTGGGCAGCAGACGTTCACAGAATATAGTTAGGGATTGAAAGTGTTGCGTTTCTCATTAACTCACCATCACAGGTGTTTAgtcttcACTGTTGCGCAACCTCACAATGTCTATGGACATTCCAGTCAAACGACCTAAAGACCAAAAGTGTCCGGTGGAGATAATATTAATTAGTGGGACTCGTGTCTCGTCCTCTTTTGGATGAGCACACCGCGTCTGCGATCCTGGGAAAGTTCCAGCGCAGCGGATGGATTCCGCACGAAGGCGCTGAGGCTCCAGCCTGACTGACGCCGGGGCTGTGCTGTTGCTCCGGCTCCTTGCAAACATACGCTCCACACCTCCACAGCACAAACAGCAGAGGGTTACCCACAACTACAACAGAAGTGTCTGCGGGTCCAAACAAAGATGATAGAAACCTTATCTGGACATCTGGCCACTTAAGAAGAAATATTCCTGATCTACAGTCTCAGGttccagcaccagcaccagatACTACAGTGACACAAAAGTGTATTTGCTTTGTTGGTGGCGGGCTTCCAGATTTCCACTGAAGCGCCCAGACCTCCCCTCCATCTGTACGGCTACACAAATCCACCTCCCTGCCTGCACTGAGTCACAgtttccacccctccccctgcccatCTCCCCACTGTCTGCCCGATGCACGCCACCACGGCCATCACCTCCCTGTTCTCCTTCACCAGCCCGGCCGTGAAGAGGCTGCTGGGCTGGAAGCAGGGGGATGAGGAGGAGAAGTGGGCAGAGAAGGCGGTGGACTCCCTGGTGAAGaagctgaagaagaagaagggggCGATGGAGGAGCTGGAACGGGCGCTCAGCTGCCCCGGCCAGGTCAGCAAGTGCGTGACCATCCCCCGCTCGCTGGACGGGCGGCTGCAGGTGTCCCACCGCAAGGGCCTGCCCCACGTCATTTACTGCCGTGTGTGGCGCTGGCCCGACCTGCAGTCCCACCACGAGCTCAAGGCCCTGGACTGCTGCGAGTTCCCCTTCGGCTCCAAGCAGAAGGACATCTGCATCAACCCCTACCACTACCGGCGGGTGGAGACACCAGtgctGCCCCCTGTGTTGGTCCCACGTCACAGTGAGTTCAACCCCCAGCACAGCCTCCTGGCTAAATTCCGCAACGCCTCGCTCCACAACGAGCCCCTCATGCCACAGAACGCCACCTATCCTGACTCCTTCCCCCAGCTACCCTGCAGCaacttctcctcctcccccactggCTCCTTCACCCAATCCCCGAGCACCGTTAGCTACCCCAACTCCCCCAGCAGTGCAGCTGACCCAGGGAGCCCCTACCAAATAACAGCTgagaccccgccccctccatACAGCATGACGGAGCCGGCTACGGCGGAGGACGTGAAGCCGGGAGAATCCTCCACCCCCCACAAGCTCATCTTCTCCGCCCCCCACAGAGATCTGCGGCCTGTGTGTTATGAGGAGCCAGAGTACTGGTGCTCAGTGGCGTACTACGAGCTCAACAACAGGGTGGGGGAGACCTTCCACGCCTCCTCCCGCAGCATCCTGGTGGACGGCTTCACCGACCCCTCCAACAACAAGAACCGCTTCTGCCTCGGCCTGCTGTCCAACGTCAACCGCAACTCCACCATCGAGCACACGCGCAGGCACATCGGCAAAGGTGTACACCTGTACTATGTGGGCGGGGAGGTGTACGCGGAGTGCCTGAGTGACAGCAGCATCTTCGTCCAGAGCCGCAACTGCAACTACCAGCACGGCTTCCACGCCACCACCGTCTGCAAGATCCCCAGCGGCTGCAGCCTCAAGATCTTCAACAACCAGCTCTTCGCCCAGCTGCTCTCCCAGTCAGTGAACCACGGCTTTGAGGTGGTCTACGAACTCACCAAGATGTGCACCATCCGCATGAGCTTTGTGAAGGGCTGGGGTGCAGAGTACCATCGTCAGGATGTCACCAGCACTCCCTGCTGGATCGAGGTCCATCTGCACGGCCCGCTTCAGTGGCTGGACAAGGTCCTGACCCAGATGGGCTCTCCACACAACCCCATCTCCTCTGTGTCCTAACAGCCAACATGCAGCTGGCACAGGGAGCCGAGGCCTGGCCCGGGACTCACCGGACACTAAACAGAGCTGGGCCAGTCACAGGTCCCATCGTTTCACTTTCAGTAAATACTCAAAATAGGAATATTGGAAATTGGAATATGTTCTTGTGCAGCTAAGTATATAAGTGGAAGTCTACACAGTCTTTTCATTCTGCAGCATTCACAGGTAGACCTGTATAATCTCTGACATGGCACTcgaatgacaaaaaatatggGATTTAGATATTGGTACTAATTAAGTCTTATGTCCATTTAATTTCATTAGGCTTGTGTTTTGTAATGTTTAGGGGAGCACATATTAATTTGTCATTTCAAAACACTCCATGTACAGCCTTCAGCCAGTGTGGTTTCATTTTCTcggtataaaaatatatatgctgtAGCTTTGCCTCTTTTCCAGTGTGTTTTGAAGCTTCTGTTTATCTACTTGATGTGTATGAAACGTGTAGCTTTGCAGCGTGATGCAGTGAAGGTCTGCCTGCTCAGATGCTCCTGTCTTGGACGTGCTTGCCCACGGGCTCGTTTCTGTCTGCCATGTAAAAGGACAGTTGCACTTAAAGAGAGGGGAATGTTTCTGCCTGCGGCGTCAATAGGAGACCTGCTGTGTCTGCTGACTCGAtgaaaactgaaagaaaacaagcagtcctctccctttctctctgtagGAAATATGAGGTTATAGACCAGTGCCCAGCATGCCCATGACAAGTCGTCTCCTTGTACAGTACTGTGTAATAGTAACATCTGAACTAAAGCTTAGCGTTTCTGTTGCTGTTGCATTTGCTGTAGTAAATTATAACTGGTATGTGGTTCCATTTTATTTCTGATATGAGTATATCCCACCGAAGCCACGTTTTTAATCTGTTCTAGCAGACTGatatgattctgattgttttaCTTCTCCAgaactgtacctgtactgtagtGCCTCATTATCCTTATAGGCACTCTACAGTACGGGTACAGTATTGCATCATGAaatatgtacactatatggccaaaagtcagtggacaccctactaattattgagttcaggtgtttcagccacacccattgccaacgggtgcataaaatccagcacatagatagatcctttattgtcattgtaacacgtacaacgaaattgaaaccacagccacagacaaacatttagaattcagaatggttcgtaa

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	MH1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03165	MH1	MH1 domain	Domain	Interproscan
PF03166	MH2	MH2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001132	Domain	SMAD domain, Dwarfin-type	Interproscan
IPR003619	Domain	MAD homology 1, Dwarfin-type	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR013019	Domain	MAD homology, MH1	Interproscan
IPR013790	Family	Dwarfin	Interproscan
IPR017855	Homologous_superfamily	SMAD-like domain superfamily	Interproscan
IPR036578	Homologous_superfamily	SMAD MH1 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13703	SMAD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007179	Biological Process	transforming growth factor beta receptor signaling pathway	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0030509	Biological Process	BMP signaling pathway	Interproscan
GO:0060395	Biological Process	SMAD protein signal transduction	Interproscan
GO:0070411	Molecular Function	I-SMAD binding	Interproscan
GO:0071144	Cellular Component	heteromeric SMAD protein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-