Gene detail

Detailed information of KAJ8412139.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8412139.1	COLLAGEN ALPHA	AAFF_1.1_unplaced_20	4376237	4398564	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00144060

ATGAAGCTGTTATTGATCTGCGcatttctcctctctctgaccAGTCGGTCAGACGCAATGCCACAAGCAGGCATTGACCAGAAGTGCAAGGCCGGGCCCGTGGACTTGGTGTTCATTATCGACAGCTCACGGAGCGTGCGGCCCCATGAGTTCGAGACCATGCGCAAGTTCATGATCAACATCATCCAGACGTTGAACGTGGGGGCGGACGCCACGCGCGTGGGCGTGGTGCAGTACTCCAGCCAGGTCCAGAATGTCTTCTCCCTCAAGAGCTTCACCAAGATGGAGGAAATGGTGAAGGGCATCAACGAGATCATCCCGCTGGCGCAGGGCACCATGACGGGCCTCGCCATCAAGTACGCCATGAACGTGGCCTTCTCCGCCGAGGAGGGGGACCGCCCACGCATTCCCAATGTGGCGGTGATCGTGACGGACGGCAGGCCTCAGGACCGTGTGGCGGAGGTGGCGGCCGCCGCGCGGGAAAAGGGGATCGAGATCTACGCTGTGGGCGTGGCCAGGGCCGACATGACCTCCCTGCGCGCGATGGCTTCCCCGCCCCTGGATGACCACGTGTTCCTGGTCGAATCTTTTGATCTCATCCACCAGTTTGGCCTGCAATTTCAGGACAAGCTTTGCGGGATGGACCTTTGTCTGGAGTCCGACCATGGCTGTGAGCACATCTGTGAGAGCTCTCCTGGCTCCTACCACTGTGAATGCCTTCCAGGGTATAGGCTCAATGATGATGGCAAAACCTGTGCAGcgATTGACCTGTGTGCAGAGGAGAAACATGACTGTGAGCAGATCTGCATCAGCTCTCCTGGCTCCTACACATGTGACTGCAATGCTGGGTACACACTCAACGAGGACAAGAAAACCTGCAAAGCCATTGACCTGTGTGCAGAGGAGAAACATGACTGTGAGCAGATCTGCATCAGCTCTCCTGGCTCCTACACATGCGACTGCCGTGCTGGATACACACTCAACGAGGACAAGAAGACCTGCACAAtGATCAACTACTGTTCATTCGGGAATCACAGCTGTCAACAtgagtgtgtcagtgtcctgAATGGTTATTTTTGCCGCTGTAATGAGGGATACACACTCCAGGAGGACGGGAAAACCTGCCAGCCGGACAACCTGTGTAACACCGTGGAGCACGGATGTGAGTTTCAATGCGTCAGCACCCCCGGCTCCTACTACTGCATCTGCCCTGAGGGCCAGCTTCTGCAGGAGGACGGCAAGAGCTGTGGCACCTGCAGATCTGCCAACATAGACCTGGTGCTGCTGATTGACGGGTCCAAGAGCGTTCGGCCTCAGAACTTTGAGCTGGTGAAGCAGTTTGTGAATCAGGTGGTGGACTCTCTGGACGTGTCGGCCCATGGCACCCGAATCGGCCTGGTGCAGTACTCCAGCCGCGTGCGGACCGAGTTCCCCCTCAGCCTCTACCAGAGTGCGGAGGACATCAAGACCGCGGTGATGAAGGTGGAGTACATGGAGAAGGGCACCATGACGGGTCTGGCTCTCAAGCACATGGTGGAGAACAGCTTCTCCGAGTCCGAGGGCGCCCGTGCAGCCAACAGAAACATCCCCCGGGTCGGTCTGGTCTTTACCGATGGGCGCTCCCAGGATGACATCACAGAGTGGGCAAAAAAAGCCAAGGAGGCAGGTATCACAATGTACGCAGTAGGTGTTGGGAAGGCAGTGGAGGATGAGCTGCGTGAGATTGCATCTGAGCCACTAGAAAAACACTTCTTCTACACCACCGACTTCACCGCCATCAACCAGATTGCAGAGAACCTGAAGCTCAACATCTGTGCAGAGGAGAGCCAGGGGGAGATTGAGGTGAAGGACCCGTGTGCCTGTGAGAGCTTGGTGGAGTTCCAGCAGGCCACCATGACGTCTCTGGAGCACCTGACACAGAAACATATCCTTCAGCCTCAGCCACAATCAGCACAGCTCTTACACATTCTGCTGCTTGCAGTGGCTTATATTTATCTATGTTATGTGGATGTCGGGTGGTATTAA

Transcript

AAFF_T00144060

GAGGGGTCTAGTCGGTTAACCCCCTTTGCCTGGATTAAATACCTGCTTCAACTGCCAGTCCACCACTCCATGGACGAACAACACCAGAGAGCATCCTAACATCAACAAAAGAGATAATCGGAGTACATTACCTGTCCCATTCAGGTGGCGGCTCCGTTCTCCCCCGCAGCGTGCCAAGTTCGGTTTGCATCTGTCAAGGCCCCACGCCAGAACCAGCACCCTGAACATGAAGCTGTTATTGATCTGCGcatttctcctctctctgaccAGTCGGTCAGACGCAATGCCACAAGCAGGCATTGACCAGAAGTGCAAGGCCGGGCCCGTGGACTTGGTGTTCATTATCGACAGCTCACGGAGCGTGCGGCCCCATGAGTTCGAGACCATGCGCAAGTTCATGATCAACATCATCCAGACGTTGAACGTGGGGGCGGACGCCACGCGCGTGGGCGTGGTGCAGTACTCCAGCCAGGTCCAGAATGTCTTCTCCCTCAAGAGCTTCACCAAGATGGAGGAAATGGTGAAGGGCATCAACGAGATCATCCCGCTGGCGCAGGGCACCATGACGGGCCTCGCCATCAAGTACGCCATGAACGTGGCCTTCTCCGCCGAGGAGGGGGACCGCCCACGCATTCCCAATGTGGCGGTGATCGTGACGGACGGCAGGCCTCAGGACCGTGTGGCGGAGGTGGCGGCCGCCGCGCGGGAAAAGGGGATCGAGATCTACGCTGTGGGCGTGGCCAGGGCCGACATGACCTCCCTGCGCGCGATGGCTTCCCCGCCCCTGGATGACCACGTGTTCCTGGTCGAATCTTTTGATCTCATCCACCAGTTTGGCCTGCAATTTCAGGACAAGCTTTGCGGGATGGACCTTTGTCTGGAGTCCGACCATGGCTGTGAGCACATCTGTGAGAGCTCTCCTGGCTCCTACCACTGTGAATGCCTTCCAGGGTATAGGCTCAATGATGATGGCAAAACCTGTGCAGcgATTGACCTGTGTGCAGAGGAGAAACATGACTGTGAGCAGATCTGCATCAGCTCTCCTGGCTCCTACACATGTGACTGCAATGCTGGGTACACACTCAACGAGGACAAGAAAACCTGCAAAGCCATTGACCTGTGTGCAGAGGAGAAACATGACTGTGAGCAGATCTGCATCAGCTCTCCTGGCTCCTACACATGCGACTGCCGTGCTGGATACACACTCAACGAGGACAAGAAGACCTGCACAAtGATCAACTACTGTTCATTCGGGAATCACAGCTGTCAACAtgagtgtgtcagtgtcctgAATGGTTATTTTTGCCGCTGTAATGAGGGATACACACTCCAGGAGGACGGGAAAACCTGCCAGCCGGACAACCTGTGTAACACCGTGGAGCACGGATGTGAGTTTCAATGCGTCAGCACCCCCGGCTCCTACTACTGCATCTGCCCTGAGGGCCAGCTTCTGCAGGAGGACGGCAAGAGCTGTGGCACCTGCAGATCTGCCAACATAGACCTGGTGCTGCTGATTGACGGGTCCAAGAGCGTTCGGCCTCAGAACTTTGAGCTGGTGAAGCAGTTTGTGAATCAGGTGGTGGACTCTCTGGACGTGTCGGCCCATGGCACCCGAATCGGCCTGGTGCAGTACTCCAGCCGCGTGCGGACCGAGTTCCCCCTCAGCCTCTACCAGAGTGCGGAGGACATCAAGACCGCGGTGATGAAGGTGGAGTACATGGAGAAGGGCACCATGACGGGTCTGGCTCTCAAGCACATGGTGGAGAACAGCTTCTCCGAGTCCGAGGGCGCCCGTGCAGCCAACAGAAACATCCCCCGGGTCGGTCTGGTCTTTACCGATGGGCGCTCCCAGGATGACATCACAGAGTGGGCAAAAAAAGCCAAGGAGGCAGGTATCACAATGTACGCAGTAGGTGTTGGGAAGGCAGTGGAGGATGAGCTGCGTGAGATTGCATCTGAGCCACTAGAAAAACACTTCTTCTACACCACCGACTTCACCGCCATCAACCAGATTGCAGAGAACCTGAAGCTCAACATCTGTGCAGAGGAGAGCCAGGGGGAGATTGAGGTGAAGGACCCGTGTGCCTGTGAGAGCTTGGTGGAGTTCCAGCAGGCCACCATGACGTCTCTGGAGCACCTGACACAGAAACATATCCTTCAGCCTCAGCCACAATCAGCACAGCTCTTACACATTCTGCTGCTTGCAGTGGCTTATATTTATCTATGTTATGTGGATGTCGGGTGGTATTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF10393	Matrilin_ccoil	Trimeric coiled-coil oligomerisation domain of matrilin	Coiled-coil	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR019466	Domain	Matrilin, coiled-coil trimerisation domain	Interproscan
IPR036337	Homologous_superfamily	Matrilin, coiled-coil domain superfamily	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR050525	Family	Extracellular Matrix Assembly and Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24020	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-