Gene detail

Detailed information of KAJ8410517.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8410517.1	T-CELL SURFACE GLYCOPROTEIN CD3 ZETA CHAIN	AAFF_1.1_unplaced_26	2940311	2969246	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00194210

ATGAATCTACGGAGGACAGGTGTCCTGGTGTTCCTGGCTGTGGGGGTCCCGACAGCAGAGGCTGGGAGGGGGCTGAACGATCCCATGCTCTGCTACATCCTCGACGGGGTCCTGCTGGTGTATAGCCTGATCGTTACAGGGCTGTACTTCAGAGAGAAATTCTTCAAGCCGAAGGCCAACTCTAAAGATGACAACATCTATTCGGGCCTGAGCCAACCTGCTCAAGAATATGAGGATCTGAGGCATCGGAATGATGCAGAGGGCggagccacagccacagccacgcGGGGGAACCGCAGAGAGGCTGGTAATGAGACATATACGGCCCTTAAGAAAGTGACCGAGGATGATTACAAGGAGATTGCTGTAAAGAAGGAGCGTCGCAGAAACAAACCTGAACAAGTGTACGAGGGCCTGAAGACAGCCACCAAGGACACCTATGATTCCCTGCAAATGCAGCCACTGCCCCCTCCCCGCTAAAATGGTGCGATCTCTTCCATGCCGGTTCACTCTCCTGTACAACAACCGTTCCTTGCTCTCACAGCAGTGAGCTGGTTTGTTTTGTATAGTAGGGCACTATCCATTTCTTTGAGCAGAGAAGGGGGGTCCAGTTTTATTaccaaaaacacaatgaaccaTATTCATGGACCAATTACATAGaataaaatgtatgctttcagCTGCATCAACATAAATGTGTCATATTTCAGATTAATTTACAATCACTGCCCctctcaatatatatatatacagctctggaaaaaattaagagatgatcagtttctctggttttctATTTATAGGTATATTTGTGAGGTTCATTTGTgagtaaaaatgatcatttttgttttattctataaactactgacaacatttctcccaaattccaaataaaaatattgtcatttagagcatttatttgcagaaaatgacaactggtcaaaataacaaaaaagatgtagtattttcagacctttaataatgcaaagaaaacaagttcatattcatttttaaacaacacaatactaatgttttaacttaggaagagttcagaaataaatatttggtagaataaccctgatttgcaatcacagctttcatgcgtcttagcatgctctccaccagtctttcacattgctgttgggtgactttatgccactcctggcgcaagaattcaagcagctcagctttgtttgatggcttgtgaccatccatcttcctcttgatcacattccagaggttttcaatggggttcaggtctggagattgggctggccgtgacagggtcttgatctggtggtgctccatccacaccttgattgacctagctgtgtggcatggagcattgtcctgctggaaaaaccaatcctcagagttggggaacattgtcagagcagaaggaagcaagttttcttccaggataaccttgtacatggcttgattcatgcgtccttcacaaagacaaatctgcccgattccagccttggtgaagcgcccccagatcatcaccaatcctccaccaaatttcacagtgggtgcgagacactgtggcttgtaggcctctccaagtctccgtctaaccattagacgaccaggtgttgggcaaagctgaaaattggactcatcagagaagatgaccttactccagtcctctatggtccaatccttgtggtcttttgcaaacctcagcctggctcttctttgcttctcattgatgaagggctttttttctagctttgcacaacctcagccctgcccctaggagcctgtttcgaaccgtcctcgctgtgcacttcaccccagctgccgtttgccattctttttgtaggtcacttgatgtcatcctacggttgttgagtgacattagGTCAGTAGAGTTGTTTtcaccctctgccggtctgtagctttgttgtccccaatgtctgctgcttgatcTTGTCCTTATGAACcaccgtctttgaaatttgaaggatagaagcaacctttacgctcactgtatccctctgccagtaaagccagaattgaaccctcactcaaaacttttctgttcaactcttttggcatagtcaatagttattttttgattccaattacttttgaggtactactagcagtttttttctccatccagctggtcctattgcaagaggatagtgatgaccacagcagtggcttttatacttttcctcattaaataagatttggttcaggtgatcacctaatcagtacttcattaagtagaatgaggtgtgcttgtgttggaattcaacagacactggaatggaatggctgccatacatgtacatgtacatagaTGCTGTTTTAAGAATTTTTTGGAGTgatctcttaattttttccagagctgtatatgccatttagcagacgcttttatccaaagcgacttacagtagtgaatgcatacatttttcagtatatgtggtcccagtgggaattgaacccacaacctaagtattgccaatgctgtgctctgggttgtttactgagccacacagaaccacatcctcCCAATCCTGACATTTTCAACACAAGTGTTTTTCAACAGTGATGTAAGAAACCTGGTCCATTTATTAGTGGGGGAAGTGTGTGTAACAGTCTAGAAGAGGTAGCtctatgtgtacacacacattctccttCCCTGAAGTTGGCCACACGCTGGCTGCATTTGACACGAGCCAAAATTGCCACCGCCAGCCACCTCAATTTTTGTATGTGAGCTTGCCGTCCAGCTTCGACTCCTGCCTCTGCTAGATTTCTTGAGCGTCAACACCAGTGCAAAAGCAGCTTTGAGTGTAGAGAACAATGAAAATGATGGCATATCACATATTACATACTGTTGTACATctacatttcaaatatttatttggacaAGCATTTTATGTACACTGATAGCATTCGTGTTCACCCATTCACTAGATGCAGATGTTTTATTGATACTGTATGGTTTGTACATTGTTGGATATCTATAATTCCCACCTGCCATTATTTAAGACAATTTTAACTGTTAATTTTCCATTCGTGTACGCAGTGTGCagactgaaaacaaacaaaaaaatgtttttgtgatgaTTATAAATTTTGTTATTGGGCCCCCaagtggcgcaaccggtaacgACACTTATTTGAATCCAAGTAAATGAGAGATGAATTCAACATCTGCTATTTTTGAGAaagattttaattaattatatagtGCACTAGCTAGCCCCCAGTTTTGTTCAACATTTGGCTTTTTCAGCAACTCCAATCCTGGGTGGCATTTATTGGGCTTGGTTTtagaaaaccccccaaaaatatttTGCATGATTATGTGAATATCGAATATCCTCTTACGGatattgtgaaaatgtatttcacaatatCCAACCACATATACCATTAACAAAATCCTAATTGTTCATAAAGgatgaacaattttttttttttcatgcatgGCTTTAAAATGCCTTGCAAGACACATCCGGTTGGTGCTAGGGGCACCATGTGATGTACATCATGTTACACACCATCATGAGTCAGCGCCGGTGTGCGGCTGATTGGTTACCCTAGCATTGCAGTCAGGTTGTAATTTATTGCATAATTAAATGTACAACCCAattttgagggaaaaaaaccttGATTCCTTAAGGCTTATTTTCAAGTTGTACTTATTGTGATTACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02189	ITAM	Immunoreceptor tyrosine-based activation motif	Motif	Interproscan
PF11628	TCR_zetazeta	T-cell surface glycoprotein CD3 zeta chain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003110	Repeat	Phosphorylated immunoreceptor signalling ITAM	Interproscan
IPR021663	Family	T-cell surface glycoprotein CD3 zeta subunit/High affinity IgE receptor gamma subunit	Interproscan
IPR024128	Family	T-cell surface glycoprotein CD3 zeta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10035	T-CELL SURFACE GLYCOPROTEIN CD3 ZETA CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-