Gene detail

Detailed information of KAJ8409599.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8409599.1	PROPIONYL-COA CARBOXYLASE BETA CHAIN	AAFF_1.1_unplaced_30	6856758	6896707	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00230000

ATGATCTACACACGTAGCAagctgggcggcacggtggtgcagtggatagcactgtcgcctcacagcaagaaggtctcgggttcgaatccaggccgggggcctttctgtgtggagtttgcatgttctccccgtgtccgcgtgggtttcctccggGGAAACCTGGCCCATGGCCTGGGCATCTGCCATTTCATCCGAGTCATGAACTACTCTGTGACCCTCGACACAATGGCCCCTGTGACAAACCAGAACCTGCGGGTCACCGACACCACCGTGGACGGGGTCAAGGCCCGGGTTTTTGAGTGgacaggagggatggagggCGAGCTGAAGAGGGGCCTGGTGTTCTTCCATGGAGGAGGCTGGGCCCTCGGGAGCCCCAagagGGGATCTTATGACATCCTTTGCAGGAAAATGGCAGAGGAACTGAAGGCAGTCATTTTATCCGTGGATTACCGCTTGGTTCCGGAGGTTCACTTCCCTGTCCAGTACGAGGATGCCTTCCGGGCCTCCAAGCACTTCCTCCAGCCTGAGGTTCTGGCCCGGTTCTCTGTGGACCCAGAGCGTGTGGGAGTCTCAGGTGACAGCTCCGGTGGGAATTTGGCTGCAGCCGTGGCTCAACAGGTGGCCATGGACAGCAGCATTAGCGTGAAGTTCAAGGTCCAGTCTCTGATCTACCCAGTGCTCCAGGCCCTGGACTTCAACACGCCCTCGTACCGGCAGAACCAGAAAGTGCCCATCCTCTACCGCACGCTCATGATCCGGTTCTGGCTGATGTACCTGAACGCGGATCCCAGCTTCATCGACCCGCTGCTGATCAACAACCACACGGCTCTGGACATGAGCCAGGTGGCGCCGTGGAGGACCAAGGTGGACTGGACCGCTCTGCTCCCGGCCCAGTTCAAGAAGGACTACGGACCGGTGGTGCAGGCCCGCGGGACGTCCCGGGTGGTGGAAGAGGTGCCGGGGCTGCTGGACGTGCGGGCCTCCCCCCTGCTGGCCGAGCGGGACGTCCTGAGCCGGACGCCGCGGGCGTACATCCTCACCTGCGAACACGACGTGCTGCGGGACGACGGGCTGATGTACGCGCAGCGGCTGGAGGAGGCGGGCGTGGCCGTCACCAGCGACTACTACGAGGACGGTTTCCACGGCTGCCTGACCTTCGCATTCTGGCCCACGTCCTTCTCGGTGGGCGCGCGGACTTTGGTGAACTACATCGCtagccaatggTACCCTCTTTCTACATCAACTATTCTCCCCTTGTACTACGAGTTCGCCGACACAGCCCTGGGACcgccagtgacaaaggcgatgaaccgcctcctccagacagaacccgccaagccggcggacagccaatcgctgcccccaaacgggattcccggccagagccaggcacagggatcgaaccccggctgcagtgggaaatctgcactctggATATTTGAACCCATTGCCTTCACTGCAGGCCTGCAGTGTTTCTGGAGACCACAATCCTGTGGTGTCCTCACCTGCTGGGCGACTGGGACCGTTTCACTACCTTCAGAGCACAAAACCGGTCTGGGAATCTCCCTCACTGTCATTCACTgcaagctattctccagggccagcgatgatccgactcctccgagacggaactcgcccacctactttctggaggcaccctttgcgcttctcggcgagctcgtgcaggctcaccctctcccctccccctggggcggacagccaaatgcgaCTCCCccgctcccagccagggccattctgacgcagtcagGACCGCCCACCAGGAAAGTTCTGGGCCAAAAGATTGAGTCCTGGGAGTCAGAAAGAGGCCTGGCTTTCCTCCGCAACATGAAAGTGAGTGACGGGGAGCTCATTGTTCCACAGGCTGGACTTTACTACATGTACTCCCAGACCTACTTCAGGCACACCCACTCCACCGAGAGCGAGGGGCTCGAGCACCCAGCCAGGAGCGAGCAAATGCTGCAGTACATCTACAAAAAAGTCCCATCCTACCCTGAGCCCATCCTGCTAATGAAGAACGTCCGGACCAGCTGCTGGTCCCAAAATGCAGAGTACGGCCTCTACTCCATCTATCAGGCCGGAGTGGTCCAGCTGAACGCCAAGGACCGCGTCTTTGTGACAGTCAGCAACATCAGCAGCGTAGACATGGACGAGAAATCCAGCTTCTTCGGCGTCTTCTTGTTGCAGAAAACATGCCAGATTGTGCAGACGCCGGCTGTGGCTGGGAGACCCACAAGAGTCTCGTCGAAAGCGACGTCGTTGTGCGAGCTGGCAGTGAGGAAGGATGCGACGGGGGCGCCCACCGCCGCGTTGAGGACGCTGGCGCTCGCACCCGCGTTCCGCACTGCGATGCTGGTGACGTTGATGCCCAGCGTGAGCCGGGTCTGCTCCAGGGCCTTCTCGGGCACGGCGAAGGCCTCCAGCTTCTTCTCGCCGTTGGCCATGCCCTTGCTGGATGACACCAACAACAATTTGCTGACTTTGGGCACACCCCCATTGGTAACTGTTGCCGTGGGCTGGGCTGGGACATCGGCCTCCCGCTTAACTGCCATGGTCGCCATCGGTGCTGTTGCCATGCGAGGTCCCAGGATGATGCTGGCGATGGGTAGAGGCTGGATTTTCTCGCTGTCGCTCTCTGACCGAGACCGCTTGCGGTTGGTCCACGCCGTCTTGGGCGTGGCCGCCgcacaggaggaggggggtggctgTGGGTGGCAGGGAGTGAGCGCCCTGGGGTCCGGGGTGAACGAGGGCTGCCGGGAGGCGGCAAAAGGGCCGTTGGGGTTTTGCAGCGACACTGTGCATGGGCGTGGGGTATCGAGGCCCCCCTCGCTCACAGGGTCTGGTTCAACATCTGGTTCAGGGTCCAGCCTCCGCAGCACCTCCTCCACGCTCAACAGGAGGGGCCCGCCATGCTTGACGTCCTCGGCAAAGCCACTGGCAGGGGCTCCCGCTGATGGCGCACATGACGATGGGGACGGAGACGTCCTCCGGCGAGGGCGCACTGGCCGCCAGCTCATCCACTCCCAGCCCGTTGCATTCATGCAGCTCGTTGGCGCTGGGAGGGTGGACCTGCGTCTTGGGAAGCGGGCCCTGGAGCTCTGGGGAGGCCTCCAGCTGAGGGCCACGTTTCCCGGTGACAGTGTGGTGACGGGGCAAGGCCGGATCAACGGGAGGCTGGTGTACGTATTCAGCCAGGATTTCACAGTGTTCGGTGGGAGTCTTTCCGGAGCTCATGCACAGAAGATCTGCAAGATCATGGACCAGGCGATGCTGGTGGGAGCGCCGGTAATTGGCCTCAATGACTCTGGTGGTGCCCGTATCCAGGAAGGGGTGGAGTCCCTGGCAGGATATGCTGACATCTTCCTGAGGAACGTGCTGGCCTCGGGGGTGGTCCCACAGATCTCCCTCATCATGGGTCCTTGTGCCGGAGGGGCCGTCTACTCGCCTGCCTTGACAGATTTCACATTCATGGTGAAGGACACCTCCTACCTCTTCATCACCGGCCCAGACGTGGTCAAGTCCGTCACCAACGAGGATGTGACCCAGGAGGAGCTGGGAGGGGCGAAGACGCACACCGCCGTGTCTGGTGTGGCACACAAAGCATTTGAGAATGACATCGACGCCTTGCTAAACGTCAGAGAATTTTTCAACTTCCTCCCGCTCAGTAATAAGGACCCAGCTCCTGTCACAGAGTGTCATGACCCCAGTGACCGTATGGTACCTGGTTTGGACACGATTGTCCCTTTCGAGACCACCAAAGCCTACGACATGTTGGACATTATTCAAGGAATTGCAGATGAGCGGGAGTTTTTTGAGATCATGCCGAACTACGCCAAGAACATTGTGGTCGGCTTCGCCAGGATGAACGGACGCACCGTGGGGATTGTGGGAAACCAGCCCAAAGTGGCATCGGgctGTCTGGACATCAACTCCTCGGTGAAAGGGGCTCGCTTTGTGCGCTTCTGCGACGCTTTCAACATTCCCATCATCACCTTCGTTGACGTTCCCGGGTTTCTGCCAGGGACCGCTCAGGAGTACGGCGGCATCATCAGACATGGGGCGAAGCTGCTGTTCGCTTTCGCCGAGGCCACCGTTCCCaaaatcaccatcatcaccagaAAGGCCTACGGAGGCGCGTACGACGTGATGAGCTCCAAGCACCTCAGAGGGGATGTGAACTACGCATGGCCGTCGGCTGAGGTCGCCGTGATGGGCGCCAAGggtGCAGTTCAGATCATCTTCAGAGGGAAGGCCAACCAGGCAGAGGCGGAGGCCGAGTACGTGGAGAAGTTCGCCAACCCTTTCCCTGCGGCGGTCCGAGGTTTCGTGGACGACATCATCCAGCCGTCCACCACGCGGAAGAGAATCTGCCGGGACCTGGAAGTCCTGGCCAGCAAGAGGCAGACGAACCCGTTTAAGAAACACGCCAACATCCCCCTGTAA

Transcript

AAFF_T00230000

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00229	TNF	TNF(Tumour Necrosis Factor) family	Domain	Interproscan
PF01039	Carboxyl_trans	Carboxyl transferase domain	Family	Interproscan
PF07859	Abhydrolase_3	alpha/beta hydrolase fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006052	Domain	Tumour necrosis factor domain	Interproscan
IPR008983	Homologous_superfamily	Tumour necrosis factor-like domain superfamily	Interproscan
IPR011762	Domain	Acetyl-coenzyme A carboxyltransferase, N-terminal	Interproscan
IPR011763	Domain	Acetyl-coenzyme A carboxyltransferase, C-terminal	Interproscan
IPR013094	Domain	Alpha/beta hydrolase fold-3	Interproscan
IPR021184	Conserved_site	Tumour necrosis factor, conserved site	Interproscan
IPR029045	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR029058	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR033140	Active_site	Lipase, GDXG, putative serine active site	Interproscan
IPR034733	Domain	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Interproscan
IPR051047	Family	Acyl-CoA Carboxylase Beta Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43842	PROPIONYL-COA CARBOXYLASE BETA CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004658	Molecular Function	propionyl-CoA carboxylase activity	Interproscan
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006955	Biological Process	immune response	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0016874	Molecular Function	ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-