Gene detail

Detailed information of KAJ8407882.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8407882.1	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	AAFF_1.1_unplaced_37	4580497	4605784	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00269260

ATGAATGTCTCCCGCACGTTGTCAAATGGAGAAACGGTGTCAGAAGACTTTGCTGGGAGAACTGTGCTGGTCTGTGTGATTCTAGGCCTTTCCTTCCTGGTGGGGGCTCCGGGGAACCTGCTGGTGATCTGGACCATCCTCCGGCATGTCAAGCAGCGCTCCCACACCGTGGTGCTCATCCTCCACCTCGCTGCTGCGGACCTGCTGGTCCTCATCACTCTGCCGCTGTGGATATACTCCTTCGCCCGCTCCTGGGTCTTCGGCTCGGCCGCGTGCAAAGCCATGACCTACATTATCACCTCCTGCATGTACGGCAGTGTGTTCCTCATCACCGTCATGAGCGTGGAGAGGTTCGTGGCGGTCCGGTTCCCCTTCACCTCAATCAGCTGGAGGAATAAAAAGATGATGAGCAAGGTGCTCGTAGTCCTCTGGGCCGCAGCATTCCTCTTCAGCGTTCCCGTCATTCCCACGAAGGTGTTAGACGTGGAGGATGGAGAAGAACAGTGCCTGTACAGAATGTACTCCTCCACCAGCCAGGAGGTGGCCTGCCTGCTGCTGGAGATCCTGGTGGGCTTTGTTGTGCCCTTCTCTGTCCTCACGGTGTGCTACGGCTGCCTGTTTGGCCGCATcaggcagatgacgttcaaaaCCAAGCAGAAATCCACGGTCCTGATCGCCAGCGTGGTCCTCGTTTTCCTCCTCTGTTGGCTTCCTCACCAGGTGGGGAATGTGCTGTCCCTGGTGAGCATCAGCATAGAGGAATCCAACCCAGACAGTTCGGGGACTCTGGAGGCCGTGGTAAATACAATGACCTACATCGCAGGGGCCTTGGTCTTCATCAGCAGCTCGCTGAACCCACTGATTTACGTCTTCGCCGCACACAACTTCCGAAGCTCTCTCCAGAACATGGGGATACGGAGGCTCTTTCGTGATATCTCCAACTCCGGCACAGCTGGTGCAAATGGGGGTAAACTGGGTTCGGATGAGAGGGAAATAATTCTCTTGGTGTGGCAAATTGTGGATCTACATGAGAAAAAGGTGGGAAAACTTCATAGGTGTCTTGTAAAGCCagacagtttggaattgacagAGCAATGTAAGGAGGAGACAGGGTTGACTTGGGAGGAACTCTGCGAGGCCGAACCTCTGGACCGCGTTCTGCAACAGTTCCAGCAGACTGTCTCAAGTGAACTTAAGGCTCTGGGAAGAAACTCCTACACACTCTGTGTTGATGGGCCTTTGATCATTAGACAGGCATTCCACCCTGAAGCCTCTAAAAAGAACCTGGTTCTTCCAGATTGTTTCTTTTCGTTCGTGGATCTGAAGAAAGAGTTTCACATATGCTGTCCAAACGCAGGCCCGGGGAAGGATTTGACAGTGTCCTCCATGTTGGAGTACATGTGCATCCCTGCAGACCTGGCAGAGCAGGTAGTGGGGGTGCTAGAGGTGAGGAGCATGGTGCTGCTGACACTACGCCTCCTATCTGATCCCTACAATCACAAATTCACTAGCTTTGAAACAGTCAAGTACAAATTTGAGTCAGGAGCATGCAGTAAGACCGAGGCGGTGGACAGTGAGACGGTCATCCGTGCCAGAGGTCTTCCATGGCAGTCCTCTGACCAGGACATTGCTCGGTTCTTCAAGGGCCTCAACATCGCCAAgggtGGAGTGGCCTTGTGCCTGAATGCTCAGGGCAGGAGAAACGGGGAGGCCTTGGTGCGCTTTGTTGACCCTGAACACAGAGACCTGGCTCTGGAGCGTCACAAACACCACATGGGAAGCCGCTACATTGAGGTCTACAAAGCCACAGGAGAGGAATTCTTGAAGATAGCAGGAGGGACTTCTAATGAGGTGGCCCAGTTTCTGTCGAAGGAGAACCAGGTGATCATTCGAATGCGTGGGCTGCCCTTCACTGCCACCCCAGAGAACGTCCTGGGTTTCCTGGGGCCAGACAGCCCAGTGACCGACGGCAGTGAGGGACTGCTCTTTGTCAAGTACCCCGACGGTCGCCCCACAGGGGACGCCTTTGTGCTGTTCGCCTGTGAGGAGTACGCCCAGAACGCCCTGAAAAAGCACAAGCACATCCTGGGGAAGAGATACATCGAGCTGTTCCGCAGCACTGCCGCGGAGGTCCAACAGGTGCTGAACCGCTACATGTCCGCCCCTCTGATCTCCAcgctgcccccgccccccataaTGCCCATGCCCATGCTGGCCACGCCCCCCTTCCTGACCTCCAGCAGCAGCCGGGACTGCGTGAGGCTGAGGGGCCTGCCCTACACCGCTGCCATAGAGGACATCCTGGAGTTCATGGGCGAGCACGCCATCGACATCAAGCCCCACGGCGTCCACATGGTGCTCAATCAGCAGGGCCGGCCCTCCGGAGACTCCTTCATCCAGATGAAGTCGTCGGACCGAGCGTTCATGGTGTCTCAAAAGTGCCACAAGAAAATGATGAAGGACCGCTACGTGGAGGTGTTCCAGTGCTCCACGGAGGAGATGAGCTTTGTGCTGATGGGGGGCACTCTGAACCGCAGCGGCCTGTCCCCCCCGCCCTGCAAGCTGCCATGCCTGTCACCCCCTGCCTATGCTGCATTTCCAGCCCCCACTGCCTTGCTGTCCACCGAAGCAGCCCTGTACCAGCCCCCCCTGCTGGCCACACCGCGCACCCCCCAGCCCCAGACTCACAGCCCCGCCCTGGCCTTCTACCCACCCCAACCTCACCCCCAGCtctacatgaacatgaacatgaactaCACGGCCTACTACCCCAGCCCCCCCGTCTCCCCCTCCACAGTGAGCTACTTCGCCGCGTCCCCCGGGGCCATGGCTGCCGCCGTGGCCGCCCAGCCGCCCGCCGCCATGCTGCCCCAGCCAGGAGCTCTGGTCAGGATGCAGGGCCTGCCCTACAACACCGGTGTCAAGGACATCCTCAGCTTCTTCCAGGGGTACCAGTACGCTCCCGATGACTACAGCAGCATGATACAGCTGAGCGATCAGGGGCGGGGCCTCATCCAACCCAAAGAGTGGCTCTGTCTGTAA

Transcript

AAFF_T00269260

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050666	Family	Epithelial Splicing Regulatory	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-