Gene detail

Detailed information of KAJ8407393.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8407393.1	FIMBRIN/PLASTIN	AAFF_1.1_unplaced_39	5428857	5456766	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00279670

atgatgatgatgtacAGAGGCAGACCTGTGAACGACCCAGGTGCACCCGACTCAGGTTCCCACTGCCGAGCGTgtcacaagatggctgcccccACGCCAATCACCCAGGACGAGATTCAAGATCTCAGAGAGGCCTTCGCCAAAATCGACGTGGACTCCACGGGACACATTGGCACCGGTGACCTCAATGACCTCTTCAAAGCGGCCAACCTACCCTTGCCTGGGTACAGGGTTCGAGAGATCATTCAGAGCCTGGCTGCCACCGGAGAGCAGCACGATGGCATGGTCACCTTCGACGAGTTCCTCAATgTAGTGAGTGGGCTGAAGAGCTCAGAGGTGGCTAAGACGTTCAGGAAGGCCATCAACAAGAAGGAGGGCATCTGTGCTGTGGTGGGCACATCGGAGCAGTCCAGCGCAGGCACTCAACACTCCTACTCAGAGGAGGAGAAGGTGGCCTTTGTTAACTGGGTAAACCAGGCACTGAAGAACGATCCAGACTGCAAGCATGTGTTGCCTATGGACCCCAACACCAACGACCTGTTCACTGCTATGGGGGACGGCATCGTCCTCTGTAAGATGATTAACCTCTCCGTACCTGACACGATCGACGAGAGAACCATCAACAAGAAGAAGATCACGCCCTTCACCATCCAGGAGAACCTGAACCTGGCGCTGAACTCGGCGTCGGCCATCGGCTGCCACGTGGTGAACATCGGCGCTGAGGACCTGAAGGAGGGCCGGCAGCACCTGGTCCTGGGCCTGCTCTGGCAGGTCATCAAGATCGGCCTGTTCGCCGACATCGAGATCAGCAGGAACGAGGcccTGATTGCTCTGTTGAGAGATGGGGAGACTCTGGAGGACCTGATGAAACTCTCCCCTGAGGAGTTGCTGCTGCGCTGGGCCAATTACCACCTGGAGCAGGCCGGCTGCAACAAGATCAACAACTTCAGCTCTGACATCAAGGACTCCAAGGCGTACTACAACCTGCTGGACCAGGTGGCCCCCAAGGGAGAGGAGGACGGCATTCCCCCCATTCTCATCGACATGTCCGGGATCCGGGAGAAGGAGGATTTGAAGAGGGCAGAGTGCATGCTGGAGCAAGCCGACCGCCTGGGCTGCCGGCAGTTCGTCACGGCGACCGACATTGTCCGCGGCAACCCCAAGCTGAACCTGGCCTACATCGCCAACCTGTTCAACAAGTACCCGGCCCTGAAGAAGCCCGAAAACCAGGACATTGACTGGAGCTCCATCGAGGGTGAGACCAGGGAGGAAAGAACATTCCGGAACTGGATGAACTCTCTGGGCGTCAACCCCCGCATTAACCATctctatgtAGACCTGGCTGATGCCCTGGTGATCTTCCAGCTGTATGAGAAGATCAAGGTTCCAGTGGACTGGGGTAGAGTGAACAAGCCTCCATACTCCAAACTGGGTGGCAACATGAAAAAGCTGGAGAACTGCAACTACGCAGTGGACCTGGGGAAGAACCAGGCCAAGTTCTCCCTGGTGGGGATCGCTGGGACGGACCTGAACTCTGGGAACCACAAGCTCACCCTTGCCCTGCTTTGGCAGCTGATGAGGAGGTACACGCTGAATGTCCTGGAGGACCTGGGTGACGGGCAGAAGGTGAACGATGACACCATCATCACTTGGGTCAACGAGAATCTGGCCCAGGCTGGCAAAGGCACCATCTCTGGATTCAAGGATGGGTCTATCAGTACCAGTATGCCGGTTCTGGACCTAATTGATGCCATCCAGCCTGGATCTATCCGCTATGACCTGCTGAAGACCGAGGACCTGTCCGACGATGAGAAGCTCAACAACGCCAAGTACGCCATCTCCATGGCGAGGAAGATCGGCGCCGTGTGTACGCCCTGCCCGAGGACCTGGTGGAGGTCAAGCCCAAGATGCGATCAGGTTTTCTCCATCACCGCGAAAACAGAGGAGGAGGTGAACATCGTCAGGAACGTGTCCAGTGACTATGAGACGGTGCTGTGGCAGCCAGCCGCACCCGATTACATCACCGCGAACGCAGAGGTCCACCTGTTCGTCCCCGCGTCCAGCCTGGCCACGGTGAAAGGCCTACTGGACAACCACAGCATCCTGAATGAAGTTCTGCTACAGAACACCCAAGAGCTGATTGAGAAGCAGACCAGAAATGTCTCCACGGACCCCAGGAGCAGCATGTCATATTACGAGAGATACCACCCTCTGGAGGAAATATATGAATGGATCAATAAAACCACTCATGATCACTCAGATATGGTGAAGGTCATTCTGATTGGCTCATCATATGAGAAAAGGCCGCTTTATGTACTGAAGCTGTCAGGAAAGGGGGGAACCCAGCCAAAGAGAGCCATGTGGATAGACTGTGGGATCCACGCCAGGGAATGGATTTCGCAGGCGTTCTGCCTCTGGTTTGTTCAATACTCTGTTGAATATTACAATCATATTCCTGACATCACTGAAATCCTGGACAACATGGATGTCTACGTGCTTCCAGTGATGAACCCTGATGGATATAAATACACATGGACCACGAAACGGATGTGGAGGAAGAACCGCTCACGGCAGCCTGGCAGCTACTGCGTGGGTACTGACCTCAACAGGAACTTTGACGCAAACTGGTGCACGGTAGGCTCCTCCAACAGGGCTTGCGATGACACGTACTGCGGCCAGTTCCCCGAGTCCGAACCCGAGTCCGAGGCTGTGGCCAACTTCCTGCGCAGCCACAAGGAGACGATGAAGCTCTACCTCTCCATCCACTCCTACTCCCAGATGCTGCTCTTCCCCTACTCCTACACCTACGAAGAGGCGGACAATCATGAGGAGCTGAATGAGCTGGCTAAAGAAGCAGCAATGAATATCAGAAGACACTACAGGAGCTTTTACAAATTTGGAGCTGGAGCCAAAACCATATACCTGGCCCCCGGTGGTTCTGATGATTGGGCCTACAACCTGGGCATCAAATACTCCTTCACCTTCGAGCTCCAGGACAAGGGGAGGTACGGCTTCCTTTTGCCACCAGAACTCATCCCCAACGCCTGCAACGAGGCCCTCACGGCGGTGAAGACCATCGCTCTTGGGGTCATCAAGAAAACACAGTGA

Transcript

AAFF_T00279670

atcgaaaataacaaaatgggACAAACTCGTTGTCATAAACTGCCATACAAACCTGCTCCATCCTCTCCataaatgatgatgatgtacAGAGGCAGACCTGTGAACGACCCAGGTGCACCCGACTCAGGTTCCCACTGCCGAGCGTgtcacaagatggctgcccccACGCCAATCACCCAGGACGAGATTCAAGATCTCAGAGAGGCCTTCGCCAAAATCGACGTGGACTCCACGGGACACATTGGCACCGGTGACCTCAATGACCTCTTCAAAGCGGCCAACCTACCCTTGCCTGGGTACAGGGTTCGAGAGATCATTCAGAGCCTGGCTGCCACCGGAGAGCAGCACGATGGCATGGTCACCTTCGACGAGTTCCTCAATgTAGTGAGTGGGCTGAAGAGCTCAGAGGTGGCTAAGACGTTCAGGAAGGCCATCAACAAGAAGGAGGGCATCTGTGCTGTGGTGGGCACATCGGAGCAGTCCAGCGCAGGCACTCAACACTCCTACTCAGAGGAGGAGAAGGTGGCCTTTGTTAACTGGGTAAACCAGGCACTGAAGAACGATCCAGACTGCAAGCATGTGTTGCCTATGGACCCCAACACCAACGACCTGTTCACTGCTATGGGGGACGGCATCGTCCTCTGTAAGATGATTAACCTCTCCGTACCTGACACGATCGACGAGAGAACCATCAACAAGAAGAAGATCACGCCCTTCACCATCCAGGAGAACCTGAACCTGGCGCTGAACTCGGCGTCGGCCATCGGCTGCCACGTGGTGAACATCGGCGCTGAGGACCTGAAGGAGGGCCGGCAGCACCTGGTCCTGGGCCTGCTCTGGCAGGTCATCAAGATCGGCCTGTTCGCCGACATCGAGATCAGCAGGAACGAGGcccTGATTGCTCTGTTGAGAGATGGGGAGACTCTGGAGGACCTGATGAAACTCTCCCCTGAGGAGTTGCTGCTGCGCTGGGCCAATTACCACCTGGAGCAGGCCGGCTGCAACAAGATCAACAACTTCAGCTCTGACATCAAGGACTCCAAGGCGTACTACAACCTGCTGGACCAGGTGGCCCCCAAGGGAGAGGAGGACGGCATTCCCCCCATTCTCATCGACATGTCCGGGATCCGGGAGAAGGAGGATTTGAAGAGGGCAGAGTGCATGCTGGAGCAAGCCGACCGCCTGGGCTGCCGGCAGTTCGTCACGGCGACCGACATTGTCCGCGGCAACCCCAAGCTGAACCTGGCCTACATCGCCAACCTGTTCAACAAGTACCCGGCCCTGAAGAAGCCCGAAAACCAGGACATTGACTGGAGCTCCATCGAGGGTGAGACCAGGGAGGAAAGAACATTCCGGAACTGGATGAACTCTCTGGGCGTCAACCCCCGCATTAACCATctctatgtAGACCTGGCTGATGCCCTGGTGATCTTCCAGCTGTATGAGAAGATCAAGGTTCCAGTGGACTGGGGTAGAGTGAACAAGCCTCCATACTCCAAACTGGGTGGCAACATGAAAAAGCTGGAGAACTGCAACTACGCAGTGGACCTGGGGAAGAACCAGGCCAAGTTCTCCCTGGTGGGGATCGCTGGGACGGACCTGAACTCTGGGAACCACAAGCTCACCCTTGCCCTGCTTTGGCAGCTGATGAGGAGGTACACGCTGAATGTCCTGGAGGACCTGGGTGACGGGCAGAAGGTGAACGATGACACCATCATCACTTGGGTCAACGAGAATCTGGCCCAGGCTGGCAAAGGCACCATCTCTGGATTCAAGGATGGGTCTATCAGTACCAGTATGCCGGTTCTGGACCTAATTGATGCCATCCAGCCTGGATCTATCCGCTATGACCTGCTGAAGACCGAGGACCTGTCCGACGATGAGAAGCTCAACAACGCCAAGTACGCCATCTCCATGGCGAGGAAGATCGGCGCCGTGTGTACGCCCTGCCCGAGGACCTGGTGGAGGTCAAGCCCAAGATGCGATCAGGTTTTCTCCATCACCGCGAAAACAGAGGAGGAGGTGAACATCGTCAGGAACGTGTCCAGTGACTATGAGACGGTGCTGTGGCAGCCAGCCGCACCCGATTACATCACCGCGAACGCAGAGGTCCACCTGTTCGTCCCCGCGTCCAGCCTGGCCACGGTGAAAGGCCTACTGGACAACCACAGCATCCTGAATGAAGTTCTGCTACAGAACACCCAAGAGCTGATTGAGAAGCAGACCAGAAATGTCTCCACGGACCCCAGGAGCAGCATGTCATATTACGAGAGATACCACCCTCTGGAGGAAATATATGAATGGATCAATAAAACCACTCATGATCACTCAGATATGGTGAAGGTCATTCTGATTGGCTCATCATATGAGAAAAGGCCGCTTTATGTACTGAAGCTGTCAGGAAAGGGGGGAACCCAGCCAAAGAGAGCCATGTGGATAGACTGTGGGATCCACGCCAGGGAATGGATTTCGCAGGCGTTCTGCCTCTGGTTTGTTCAATACTCTGTTGAATATTACAATCATATTCCTGACATCACTGAAATCCTGGACAACATGGATGTCTACGTGCTTCCAGTGATGAACCCTGATGGATATAAATACACATGGACCACGAAACGGATGTGGAGGAAGAACCGCTCACGGCAGCCTGGCAGCTACTGCGTGGGTACTGACCTCAACAGGAACTTTGACGCAAACTGGTGCACGGTAGGCTCCTCCAACAGGGCTTGCGATGACACGTACTGCGGCCAGTTCCCCGAGTCCGAACCCGAGTCCGAGGCTGTGGCCAACTTCCTGCGCAGCCACAAGGAGACGATGAAGCTCTACCTCTCCATCCACTCCTACTCCCAGATGCTGCTCTTCCCCTACTCCTACACCTACGAAGAGGCGGACAATCATGAGGAGCTGAATGAGCTGGCTAAAGAAGCAGCAATGAATATCAGAAGACACTACAGGAGCTTTTACAAATTTGGAGCTGGAGCCAAAACCATATACCTGGCCCCCGGTGGTTCTGATGATTGGGCCTACAACCTGGGCATCAAATACTCCTTCACCTTCGAGCTCCAGGACAAGGGGAGGTACGGCTTCCTTTTGCCACCAGAACTCATCCCCAACGCCTGCAACGAGGCCCTCACGGCGGTGAAGACCATCGCTCTTGGGGTCATCAAGAAAACACAGTGATCCCCCCCAACAAAAACCTCATTTATGACTAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00246	Peptidase_M14	Zinc carboxypeptidase	Domain	Interproscan
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan
PF02244	Propep_M14	Carboxypeptidase activation peptide	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000834	Domain	Peptidase M14, carboxypeptidase A	Interproscan
IPR001589	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR003146	Domain	Carboxypeptidase, activation peptide	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR033849	Domain	Carboxypeptidase B2	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR036990	Homologous_superfamily	Metallocarboxypeptidase-like, propeptide	Interproscan
IPR039959	Family	Fimbrin/Plastin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19961	FIMBRIN/PLASTIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004181	Molecular Function	metallocarboxypeptidase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005884	Cellular Component	actin filament	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0032432	Cellular Component	actin filament bundle	Interproscan
GO:0042730	Biological Process	fibrinolysis	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0051017	Biological Process	actin filament bundle assembly	Interproscan
GO:0051639	Biological Process	actin filament network formation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-