Gene detail

Detailed information of KAJ8405183.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8405183.1	FERMITIN 2-RELATED	AAFF_1.1_unplaced_49	835452	845625	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00321740

gagagagggaagtgacacagacacatttcAGAAACTGCACGGTGACAGAACAACACCGATTCGGAGAGAGGGCGGAGGTCCTTTCAGAGAGAAGCTAAAACCCAGGACGTTTATTGGAATCCAAAGGAAGtATGGCAGCGTGGGACCTGTCTGTTGCAGTGGAGGAGTTGGGCCCTGaggcccctcctctctctgtcagcgtgacctctgacctgcacatAGGCGGAGTCATTCTTAAAGTTGTGGAAAAGACAGAGATATCGAGGGACTGGTCAGACCATGCGCTGTGGTGGGAGCAGAAGCAGCAGTGGCTCCTTTCGCCGGCCTGGACACTGGACAAGTGTGGGATCCACGCCGACGCCCGGCTCACCTTCACGCCTCAGCACAAGCCCCTGCGCCTGGGCCTACCCAACGGAGTGACCCTGAAGCTCCGGGCCTGCTTCTCGGGGCCTGCCTTCCGCACTGTCATGGGCATCTGTAGGGTACTGAACATCCGGCACCCTGAGGAGCTATCTCTGCTCCGGCCagtggaggagaagaagaaaaagaaagataagGAGACAGCAGAGGAAGTATATGACCTCACAGGAGTACCTCTGACCTCAGTTTCCATCCCCAGCCTGTACAATGGAATGCCTGCTCACTTCGCTGACTCCCCCCAGACTGAGGCTGTATACAAGATGCTGTCCATCACCCAGCCAGCTCCTGCCCCTGAGAACATAACCAAGATGTACCGTCCCGCCAGCGTGGTGGACAAAGCCCACATCCACAGCAGGTGGCTGGACTCATCTCGTTCCCTGTTACAGCAGGGAGTGCAGGAGAACGACAGACTGTGGCTGCGATTCAAATACTACAGCTTCTATGATCTGGAGCCCAAGTACGATGCCGTGCGCCTCACCCAGCTGTATGAACAGGCTCGGTGGGCTGTCCTGTTGGAGGACATCGACTGCACAGAAGAGGAGATGATGCTGTTCGGTGCCCTACAGtaccaCATCAACAAAGTGTCACAATCAGAGCCGCAAGGGATGACATCATGCCCGGCAATGGACGACCTGGACTCAGCCCTGCAGTGTCTGGAGGTCAAAATGGATGGAGAGACCAGCTCCATGGATATGCTGGAAACCATGACAACTGCCCCAGAACTGCATGATTACCTTAAAATATTCCGACCAAAGAGGCTGACACTGAAAGGCTATAAGCAGTACTGGTTTACATTCAAGGACACCTCCATCTCCTATTATAAAAGCAAGGAGGAAGGTTTTGGGGAGCCGATACAACAGATGAACCTGAAAGGATGCGAGGTGGCACCAGATGTTAACGTGGCGGGCCAGAAGTTCTGCATCAAGCTGCTGATCCCAGCCCCGGAGGGCATGAACGAAGTTTACCTGCGCTGTGAAAATGAAAAACAGTACTCCCAGTGGATGGCGGCCTGTCGCCTAGCCTCTAAGGGGAAGAATCTGGCAGACAGCTCTTTCCCCACTGAGGTGCAGAACATCCAGGCCTTCCTGACCATGCAGTGCCCTAACCCGAAGTCTCAGTCCGCCCAGGCCGATGACAGTATCAACACACATAGCCTCGTCTCCCCCCGCTACCAAAAGAAGTACAAGGCCAAACAGCTAACGCCTCGCATCTTGGAGGCCTATCAGAACGTGGCTCAGCTCTCTCTGACCGATGCCATTCTCAGGTTCCTCCAGATCTGGCAGGCCCTGCCCGATTTTGGGGTGTCCTATTTTGTGGTGAGGTTTAAGGGCAGCCGGAAAGACGAGGTCTTGGGCATTGCCAACAACCGTCTGATCCGCATCGACCTGGGAGTGGGCGACGTGGTGAAGACCTGGCGCTACAACAACATGAGGCAGTGGAACGTCAACTGGGACATCAAGCAGGTGGCCATCGAGTTTGATGGGAACGTAAACATTGCGTTCAGCTGCGTGACGGCCAACTGCAAGATCGTGCACGAGTACATTGGTGGCTACATCTTCATGTCCACGCGAAGCCGGGAGCAGAGTGACACCCTTAACGAGGACCTTTTCCACAAGCTCACTGGGGGCCATGATGCACTGTGAGACCCCCAGGGACCATAAAATCACCTTCCCCAATCCCCGTGTCTTTGTGTACCCTGGTGCACACTGTGTATACCAAAGACTCTAGCTGAACACATCTCATTAGTTTGTGCTCATCAAAACTGTGCCATAGTTGTCAAACCAGGCCCCAGGGGACCACTGAATCTTTTAACGTCTACTCTTATACAACTTTATAACATTGAGTCAATTACGAGGCTTAATTAATCCCCATTAACTGACTTCAATTATCAGTCAATATCTTTCTAACTAAATAGAGCATGAAACTGGAATCATGGCAGGGAGTTGGGTCAATACGGTAGAGGGGTAGAGGTAATTGCTATGTAGAAAGAATGCAACAGGTTTAAAGTATTAACATGTTATTTATTATAACAGCTGTCGTCACCTGTCAAGTTGTAGGACCTTTGATCACATCCTATCAGCGCTTACCAACcgacaaaaaaataatctgcTGTCGATACGATTGTCGTTTTCAATTCAATATCTCAATCCTCAGATTTAATCTGTGCAGGTATTTATGCTCTAACACAAACTGTCACACGTTATTTAATCACATCTAATCCTGTGTTTGAATTGTAATTTGATTGTTTGCAAATGCTATGCAAAAACGAAGTTTCATGATTAAAAATATCATGTTTTCCTAATTTGAATTGTAAATACAATATTTCACAGATGAAtgactaaaaacaaaacatttgtatgAATGTGGTACAGAAGAACTTCACAGCTCTGATACAATTTCACTGTGTCGTTGCCTTGCTGTTTCTGTGTAATCCATGTAAACAATATTTATCAAATAGAATTCATTGTTTCTAATAGATAATGAATCATTCCACTAAAATATGCAGGAGTATTATCAATATAAAGTAAGCTGTGCATTTGAGAAAGAGGAATAATTATTCTTAATGCCATTATATGTTGCATAGAATTTAATACCCGGTCACAGGTGTGCTGGATAGACATAAAACTCGAGAAAACAGTTTGATAAACTCTTTTATAATACATGCTCATAACTTGACTTAAATGGTTGTCCATTATTTTGATATTGTCAAAGTAATTAATTATCTCATGCTCTTCACAGATTTATAACAGTAACGTTTTTTAAAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169	PH	PH domain	Domain	Interproscan
PF00373	FERM_M	FERM central domain	Domain	Interproscan
PF18124	Kindlin_2_N	Kindlin-2 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR019748	Domain	FERM central domain	Interproscan
IPR019749	Domain	Band 4.1 domain	Interproscan
IPR035963	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR037837	Domain	Kindlin/fermitin, PH domain	Interproscan
IPR037843	Family	Kindlin/fermitin	Interproscan
IPR040790	Domain	Kindlin-2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16160	FERMITIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005178	Molecular Function	integrin binding	Interproscan
GO:0007159	Biological Process	leukocyte cell-cell adhesion	Interproscan
GO:0007160	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0030055	Cellular Component	cell-substrate junction	Interproscan
GO:0033622	Biological Process	integrin activation	Interproscan
GO:0033632	Biological Process	regulation of cell-cell adhesion mediated by integrin	Interproscan
GO:0070527	Biological Process	platelet aggregation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-