Gene detail

Detailed information of KAJ8402791.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8402791.1	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	AAFF_1.1_unplaced_62	3974057	3978461	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00364630

atgagaagggttttcgacgtcctcggtcggacgggcggcggcacgtcaactgcttcagcttcgccagggaggacaatccgtctcggactactccatcgagttcggACCCTGGcaacctcagcaggatggaatgccgtggccacctacgatgccttcttgcacggcctctccgagcgggttctggacgaactaaccgtgtgcgatctaccccaggacctggacagactcgtggacctggctatccgcatcgacactcgtctgcaggagagaggaaagaggcgtcAGGAGTCTCCTGCTTCCCCGTTTCCGCCCAACGACACGACCCGACTTCCCGCTCAACCCATGGCGACTGCGGAGCCCATGCAGGTGAATCGGACTCATCTGTCCGAGAccgaacgccagcgccgccgggagggaggactttgcctgtactgcggaggcaagggacatttccggttatcctgtccggtaaaagacagcgcccaccctgatgggcacgccctagccgagatccaggagatcacccagccactggatctgctagtttctgggaatcacagGGAGAAACTGGCGTTCTACCTTATGGAATCCCCTCTTGCTCCTgtagtgcttggcggaccctggctggcaacccacaaccccagcattgactgggcgactggaaacatccgggagtgGAGTGTTTTCTGCCAGAAGTCATGCCTGCGTTCCGCTACTACCCCTGGGGATCCCTCGTCCAGGGCTAAGGAGAGACCAGTTGACCTGTCACTAGTGCCCCCCGAATATCACGATCTCGGCCAGGCGTTCagtaagtcccgtgcctgcacattaccacctcatcgtgcctatgactgtcctattaaccttcttcctggttctactccacccagaggccacctgtATTCTTTGTCCGTCCCAGAAAACAAGgctatggaggagtacatctccACGTCTCTAACCTCAGGTATCATCCGCCCttcgtcatcccctgctggcgcaggatttttctttgttaaaaagaaagatggaaccctgcgtccttgtattgactacagggggctcaacgccatcactattaaaaaccgctacccactcccattgATGTCATCGGCGTTCGACAACCTTCAGGAGGGGCAGTTCTTCactaaattggatctccgcaacgcctaccacttggtccggattcgggaggggatgagtggaagacggccttcaacacccacacagTTTTCCTTTCGTTGGAACCCCGATGCCCAGGAGGCCTTcgagagactcaagtcccggtttacatctgcccccatcctcgcactcccggatcccacacGTTCAAAGAATATAAAACCTGATGCCCTATCCCGGATCTACGactctccagaagaggagagtagCCCTGAACCTATCCTGCCCCCTAGCTGCGTGTTAGCGGCAGCCAAATTTGACATTGTTCGGGCGGTGGAGGAGGCGCTTCTCACTACACGGTCTCACAGGGAGACGCCGGCCAACCGCCTATTCGTTCCTGAGACCGTCCGGTCTCAAGTACTGGAGTGGGCCCATTCctccccgatggcctgtcacccgggggtttcacgcaccctagcctttctttcgcgtaggttttggtggcccactatgAGGAACGACACGGTCGAATTCgtgacagcctgtgtgccctgtgcccggtcCAAGTCCTCCAACGCTCGTCCCAgtggtctccttcagcccttggcggttccacgacgcccatggtcccacgtcgccctagactttgtgaccggtctaccaccatcagaaggagatgacctcggatcggggtccccagttttccagcgggttctggagagCGTTCTGCTCCTCATTGGCGCCAAACCTAACCTCTCTTCCGgtttccacccagagaccaatggccagacggaacgttacaaccaggagttggggaagggactgcgctgtctagccgaacaaacccctaccacttggtcacgctccctgccctgggtggagtacGCACACAATTCCCTCCCCGTTTCCTCCACTGGTATGTCTCCTTTTCAGTGCAGTCTagggtaccaacctcctctatttccggaggaggagagagaggtggaggtgccatctgccaaagTTTTTGTGAATAGAGCCCAGAAGActtggaggagagcgcgtgccaccctgcttcgtcatgtctcggctatgaagagccaggccgaccgccgccgccgccctgctCCTCACTACAGAGTCGccctcctgtccgcaccccacctcccccccggctcatcgaagggggcccagtctacactgttcgccgcctgctggatgtccgacgcaggggccgtggtcgccaatttctggtggattgggagggcgttttgttgcttcgtgttcgtgttcgtgcttgtgctccagtgttcgtctgtaccccagtctcgttcccgctcctccctgtgttccctggactgccttctcgttttcgaccttcgcctgcccactgaccacgccttgcctgcccctgatacccctgaagcccgcaacgaactctgcctgtccccgaccatcctttggatctctgcattgccctga

Transcript

AAFF_T00364630

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR053134	Family	RNA-directed DNA polymerase homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-