Gene detail

Detailed information of KAJ8400870.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8400870.1	RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG	AAFF_1.1_unplaced_74	3146843	3154978	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00392240

attttgtccaactctcgtgAGGTTTGACTGTCCCCATATTAACAACGGAAAAGGAGCTGTAGTTGCTACGTTACCTAACATTAATTTCGATAATAATCAAGAAATGACTAACGGCGGTAACGTTCGTATAAATACAGTAGGATTACACATTGCGATACCAATGGATACACATATCGAGCGAATATAGCTCATTAAGTTTGTCTGAAATTGTTGATAACCAATACTGCAGTCAAGGCGTGTTTTATTACTTGATGAATCGTATAATTTACCGCTATGCACTGCAGCTAGAATTCCAATCAATCGAGGGAAAAACATAGCCAGCAAGCACAGACCCAatcaaagggaatgtgacaacgACGGCGTTGCAGTGTAGGGTGACTCGCGAAACGCCACCGTAGCATTGGTTAATCCGTAATTAGAAACTGAGTGACGGGTTTAACTCCAAACTGGGAAGGAATCGAAACTGAAATATAACACCACAAGAAAGAGGGGCAACCAATCGGGGGCACTGGATAGCTTTTAGATGCATTAAACGGACTTGAATGAAGTCGAGTTGTATTAAGCGGCCTTACTAATGTATCCAGCGAGCTCCATTGCTTTCTCCTGACATCGGAGGGAAAAAAGGTTTGCTTGTATGCGACCAAAAAGTAGCATTAGCGAACTACGTCTTTATCGTCAACACTCAGGATAGTTAACCGGAACCAGCCAGTTGCAATCGCACGGCGTAATTTGAGAAGACTAGCAAGCTAAGGATATTTAGCTGACCACTAACGTTTGCATTTTAGCTCAATTATTAACCATCTATCCTGCGCCGGCTAACGTTCATTTAATCAATTATATGTGGGCGAACGATCGCTGCTAGTTACAGATCAAGATGCCCCAGAAGCGTCGCTCACACACATGGACCGAGCTGAAACAGGCAGGAAACGAGTTTTTTAAAAGTGGACAGTATGGAGAGGCCGCCTGTCTTTACACCCAGGCCATCCAACTCCTGGAAAAGTCAGGTAAGAAGAACCAAGAGGATCTTGGTGTCCTGTACTCTAACCGTGCAGCCAGTTACCTGAAGGATGGAAACTGCGCAGGATGCGTAAAGGACTGCACAGCCTCACTTGACCTGGTCCACTTCAGCATCAAGCCCATTTTGCGACGCGCGACAGCTTATGAAGCGCTAGAGAGATACAGGCTGGCCTATGTGGACTACAAGACAGCCTTGCAGATAGACTGCAATATACCTGCTGCCCATGATGGTACCAACAGAATGACAAAGGTCTTAACAGAGCAGGATGGAGCCGCATGGAGAGAGAAGCTCCCTCCAATTCCCACTGTTCCACTGGATGTGCGTGAGAGACTGGTTCAGACAGCAATGTCCACCCCTACTGCACAACAGAATGGTACCAGCCAAAGAGAGAGACCAGGAGATGGTGCTATGAAGCAGGCCTTGTCCCTGAAAGAAGAAGGCAATGCACTGGTGAAAAAGGGGGAGCACAAGAAAGCCATtgagaaatacacacagagtCTCAAACTCAATCCCAAACAAGTCCCAACCTACACAAATAGGGCACTCTGCTACCTGTCTCTGAAGATGTACAAAGAGGCagtgcaagactgcgtggaaGCTCTGCAACTTGATTCCACTAATGTAAAGGCACTGTACAGACGAGCTCTGGCATACAAGCAGCTGAAAGACTACAAGGCCTGTGTTGAAGACCTTAACATCTTGCTGAAAATCGAGCCAAAGAACACGGCTGCACAAAAATTACAGCTTGAAGTGCAAAAGATGAAGTGAATGTATAATAGAAAAGCCGACAGGCACCGATTCTTTATTATGACTTATCTAGCAGTTCCTCATGTGGTTCCTTATGTAAATCACTACCAGACTGTCACCAGCATTCTCAAGTGATAGTGTTATACTGCATGTTGTTATTGACGCGTTTCCAGTCAGAATAGTCAATACAAAGAATGGCACAATCGATGCATTGCTAAATGAGCGTTAAATAATTGTGTATCTTGGagtgaaaacaataaatatgcGCAGGGATTGCTGTTACATACTggctttatttatgtttgtacgTGCACAGTTTGGTCAATATGGCTGTGCACTGTATATAACTTTGGTGGCCACAGGTGACCATAGACTCACGATCTTCTGTGTCACCTATGTAGACACTTGCTGGAAACCAACTCTCCACTACATGCAGTGTTCATTGGCTAACGTGTGATATAGGTCAACAAGGGTAAAGTTCcatattacacattttacacgAGCTAACTTCTAAAGCTTAAAACTACTAAATGTGAGGTCACTGTGGTCTGCTTAAAAAAACTGCCCCTTCCCCATCCTACAGATTTcacattgttttacattttagtcatttagcagacgctcttatccagagagtaCGTTTCAAATATGTACTCAATAACAAGGAAAAATAGTAATTTGCCAGATGCCATTGTCCAACTTTCAGAGCATTAGATGTTAGTCTAGTGTACTATAAACACCAAATGTACAATATCAAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00515	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF07719	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013105	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR051982	Family	Ciliary Assembly and Mitochondrial Import	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45984	RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006626	Biological Process	protein targeting to mitochondrion	Interproscan
GO:0031072	Molecular Function	heat shock protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-