Gene detail

Detailed information of KAJ8398696.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8398696.1	GAG-RELATED PROTEIN	AAFF_1.1_unplaced_88	143278	148744	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00418930

ATGTTTGAGATTGAGAGGCTGACTGATGACCTGGTCAAAGTGGTGATTTTGCGAATGTACAATGAAATGGTGGACGAGAGGGACCTCGTCACATGGTTGGCGAGGTACTGTGGGGTGCGAGGCTCTCCCACAAAAGTCCTAGATATAGATGGGATCTGGACGGGGAGCTGCAGGGTGCCAGTGAGGCTGGTGGAGGACCCGGAGGGGTATGGAGGTGTGCGCCATCTGCCCTCCATGGTGGTGTTGGGGGAGAATAGGGGCCTGGTCCACGACCAGGGGCAGCCTAGGCTTTGTAGGCGATGTGGAGCGCACGGTCACCTGGCAGAGGCCTCCAAGGTGGTTGTGTGCTTCAAGTGTAGGGAGCTGGGGCACTCGGGGAGTGAGTGCACGGCAGGGAGGAAGTGTAACCTCTGTGGCCTGGGCTCGCACATGTTCCGGGACTGCCCGGACTCCTTCGCAAATAAGCTGAAGAAGTCCTTTAATACCTACCGGGCACAGGTAACTGGGGCCGGAAATGGGCAGGGAGGGACGAGGCCTAGCAAGGCCCCTGAGGAGGAGGGTAGAGAAGGAGGGCCGACTGGCCCGGTGGCAGGGCCAGAGGGGACAGTGGGTcagggggtggagagggaggtaAGTGAAGGCCCAGAGTCAGACTCCAGTGCCTCGCTGGTGACCGTGGGGTCACAGCCCATGGGAGCGAGTGAGGAGGAgatggtggtggaggggggcaCCCTGAAGCGGTCGGCGGAggacagcggaggggaagagGGCGCCCATGCAGaaaagaaggggagagggggtgaggaggccCCGGGGTGTTTTGTGGGGGCGAGCCTTTCGGACAGCATGTCGGGAGTGTCGTCACCGGCCTCCCCTGACGTATCGCCCAACCAGAGCCCCTATGTGGGGGAGACAATGTCTACCCCCGGGGCAGTGCCTCCAACGGATCCCGGCGGGGGGGTAGTGCAGACATCATCTGCCTGCAGGAGTGCGGCCTGCCTTTCCGCTCCTCTTATGGGGAGTGGGAGAGGAAGTGGCCGCACGGAACATCACTCTGGAGTGGCTCAGAGGAGAACCCGGCAGACGGTGTGGCGGTTTTGGTCCGCAACAGAGGTGTGGAGGTGGTGGGGTGCACGGGTGGTTTTGTCGAAAGACAAAACGTCCACGTTTCTGCGCGACGTGGCCGGGGACTGCCGCATGGTGGATGTCTTCCGCTCCCTTCACCCGGGGCGAGAGGGGTTCACCTGGGCGAGCGCCGATGGCTCCCGGGCATCGAGGATTGATTTTCTCTTTGCCCGGGGGTTTGTTGGCGTGTCGGCGTCCTTGGCCCCGGTGTTCTTTACCGACCACTccctgctgctctgctctctggcCGTGGGGCCGGGGGTGTCGGTGGGGCGGGGCGCCTGGAGGCTGAACTGCAGTCTGCTGGAGAACCAGGTGGTGAGGGAGGCCTTCCGGGCGCAGTACGCCCATTGGCAGACGCTCCAGGGCCTCTACGGCTCGAGAGCGGAGTGGTGGGAGGAGGTGAAGGGGagggtaaaatgtttttttgtggtgaTGGGGAAGGAAAGGCGAGCAAAGGAGAGGAAGGTGTGGGCTGGGCTCCAGAGGCGCCTCAACCGCTATTTCTCCCTTCTGCACGGAGGTTTCGACTTTCGTGCAGAGGTGGAGGGAGTGAAGCGGGAGATGGCAGCGATTGCGGCCAGACGGAGCCAGTCCATAATCTTTAGGAGtaaggagagggaggtggatgAGGGGGAAACCTGctcaagattttttttccaaaaggtCATGGCGAGGGGGACCCTCATGAAGGGCCTGAAGGGGAGGGATGGGGTGACCCTTAcctccactgagggccaaaagAAGGTGGTGGAGGGCTTTTTCTCTGACCTGTTCGGGGAAAAAGCCCCCCTACCTGACAGACTGACTGACGTTTTGAATTTTGTTGACAGGACGGTGGGGGACGGTGGGAGTCTGGAGGCCGACCTCAACCCGGAAGACGTGACTGATGCATTACATTCCTTTAAGAAGGGGAAGGCCCCGGGGTTGGATGGGCTTCCCCTGgaattttatttgaccttttggGACATAGTGGAACCGGACCTGACAATTGTTTTTGGGGAGTTTGACGGGGTGGGGAGGCTGCCGGACAGCTTCAGGACGGGGGTGGTGACGCTTATTTTTAAGAAGGAGCTGCTGGCACAGGTGCTGAGAAGGGACGCCTGGATCTCAGGGTTGGGGAtcccagggagtggggggatGGAGGCCAGGTGTATCCTCTACATGGACGACGTGACGGTGTGCTGTACGGACGTGACTTCAGTGGGCAGAGTCCTGGACAGGACAGAGTGGTTTGGCCGGGCGTCAGGGGACCGGCTGAACCGAGACAAGACGACCATGAAGGTGTACGGACGGTGGACGGAGACTGACCTTCGGGACCTGCCACTGACTGTGACGGCTGACAGCGTCCGCATCCTTGGGGTCAACTTTGACTCTGAGGGTTTGGGTGGGGGGAACTTGgaggggatttttaaaaatgtggagCGAAAGCTACAGTTCTGGAGGCTCCGGAAGCTCACCTTTGAAGGGAAAATTGGCAGGGAGCCAATGTGTCCAGTGAGAGGGATGGCGCTAGGCCAAGCGGAGGAGGTCTGGAAGGCGGTGGCCGACCCGGACCTGCTGAACCGACACAGAGACCTGGCTTGGCTGGTTGCCCACGGAGTCCTGCCGGTGAGAGCGGTCATGCACGCCCGCCGTCTGGCCCAAACAGCAGAGTGCCCCCGCGCTGGATGCGGGGGTGAAGAGACCGTCTTTCATGCTCTCTGGGACTGCGGGGTTGCCCAAGAACTCTGGAGGGCAGCCCAGCCGGCTGATGGGACAGTTCTGGGGCCCGGGTCGAGGGCCGGACTGCGGGACGACGCTCGACGGCGGTGGCGGGGCGTCCCAGGGGGCCTCCAGGTGGAGAGCAGCGTGGCTGGCCACGTACTGCTGTGTGGAGGCCCTCTGGACAGCAAGAACGTTGTTCGTAATGGAGCACAAAGAACTGTCCCCGCAGGCAATCTGGAGGCTGGCCTCCAGTCACATAAAGACCTATATGGAGCAGGACGGTCGGCGCTGGGGCAAAGAGGCGGCGCGGGCCAGATGGGGGTGTGCAGCCTGGACTCTGATGGGCATGGGCAAGGAGGCCCCGATCGATGGATAGCCAGTGCCTTTGTGTTGGAGCAGCGGGACTGGGTGCAGGGGGGCCGCAGGCTGGAGGTCATCCGGGAGCTGCCCGGGTGCCTCTCGACCTTGCGGTCCCTCATCCTGGGTGGGGATTTTAACCTGTGTCTggatggggggggaggtggggtgggggaggaaacTACCGACCACTCTGCCAGAGCCCTGAAAAAGATGATAGGCGACTTCGCATTAATAGATGTGTTCTGGACGGTGCACTCGGGGGACGCTGGTTACACTTGGCGTAACTCCAGGGGGGCTGTGAGCCGTTTGGACTACATTTTCGTGGGAGGGGGGATATGTGGAGTAAAGTGTGTTCTTCTCCCCTCGTGGGCGTCGGACCACGACATGCTACAGGTCTCTCTGCCCACGGACGGGCCGAAGTGGGGGTCAGGCTTCTGGCGGCTTAACACTCTGCTGCTGGAAGCCGATGCCTTTAAGGCGGTCTTCACGTCCTTCTACCCATCGGTCCGGGCTTTACGGCCAATGTATACGTCCGCGGTAGAATGGTGGGAAGCGGCCAAGAGTCGTTTTGCAACATTCTGCCGGCGGTGA

Transcript

AAFF_T00418930

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF13966	zf-RVT	zinc-binding in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR026960	Domain	Reverse transcriptase zinc-binding domain	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR042509	Family	Zinc finger CCHC domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22639	GAG-RELATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002218	Biological Process	activation of innate immune response	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-