Gene detail

Detailed information of KAJ8398249.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8398249.1	SEMAPHORIN	AAFF_1.1_unplaced_91	507078	524919	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00428190

ATGGGGCCGAGAGGACagctcctcctcagctctgcaCTCCTGGCGCTCGCTCACGTCTGGGCCGTCAGCTTCCCCGAGGACAGCGTCCCCGTCGACACCGTCGACTACCACTACTCAAAGCAGTATCCCGTATTCAGAGGTCGGCCCACCGGCAATGAATCACAGCACAGACTGGACTTTCAGCTGATGACAAAAATTCAAGACACGCTCTTCATCGCTGGCAGGGACCAGGTCTACTTAGTGAGTTTGCGGGAGACTTACAGGACTGAGATCATCCCATACCGGAAGCTGACGTGGAGATCGGGCCAAGGGGACCGCGAAACGTGCGCCATGAAGGGGAAGCACAGGgACGAGTGCCATAATTTTATCAAAGTGCTGGTGCCCAGGAATGACGATCTGGTGTTCATCTGCGGCACCAACGGCTTTAACCCCATGTGCAGATACTACCGGTTGGATAACCTGGAGTTTGACGGGGAAGAGATCAGCGGGCTGGCGCGGTGCCCGTTTGATGCCAAGCAGACCAACGTCGCCCTCTTCGCCGATGGCAAGCTCTACTCGGCCACAGTGGCGGACTTCCTGGCCAGCGATGCCGTCATCTACCGCAGCATGGGCGACGGGTCGGCCCTCAGGACCATCAAGTACGACTCCAAGTGGTTAAAAGaaccacacttccTGCACGCCGTGGATTATGGGAATTACGTCTACTTCTTCTTCAGGGAAATCGCGGCCGAGCACAACAACTTGGGAAAGGCGGTGTATTCCCGCGTGGCGCGCATATGCAAGAACGACGTGGGCGGGTCCCAGCGCGTGCTGGAGAAGCACTGGACCTCGTTCGTCAAGGCGCGCCTCAACTGCTCCGTTCCGGGGGAGTCCTTCTTCTACTTCGACGTCCTGCAGTCCATCACGGACATCATCGAGATCAACGGGATTCCCACTGTTGTCGGCGTGTTCACCACACAGCTCAACAGCATCCCCGGCTCGGCGGTTTGCGCCTTCTCCATGGTGGATATCGAGAAGGTGTTCAGGGGCCGCTTCAAAGAGCAGAAGACAGCCGACTCCGTCTGGACCGCTTTCCCCGAGGACAGGCTCCCGAGGCCCAGGCCAGGCTGCTGTGCGGGTAAGGGTTCGGCCGAGGGACACAAAACCTCCATCGAGTTCCCGGATGAGACGCTGCTCTTCATCAAGTCCCACCCTCTGATGGACGCCGCCGTGCCGTCGGTCAACGAGGAGCCCTGGTTCACCAAGACCCGCGTCAGGTACAGACTCACTGCCTTGGCCGTGGACGACTCGGCCGGCCCACACCGGAACTACACCGTGGTCTACGTCGGCTCGGAGGCGGGCGTGGTCCTCAAGGTCCTGGCGAAGACGTCGCCCTTCTCCCTGAACGACAGCGTGCTGCTGGAGGAGATCGACGCCTTCAACCGAGCAAAGTGCCTGTACGCCAGTGAGGAGGACCGGCGCATCGTGGCGCTGCACCTGGACCGAGAGACCCACGGCGTGTTCGTCGCCTTCTCCAGCTGCGTGGTCAGGCTTCCTCTCAGCCGCTGCGAGCGCCACAGCTCCTGCCACAAGTCTTGCATCGCGTCACGTGACCCGTACTGCGGGTGGACGCCACAGGGGTCGTGCGAGACCATCCAGCCAGGCGTGGTGTCTGGGTTCGAGCAGGACGTGGAGTTCGGAAACACGGCACAGCTGGGCGACTGTCACGAAGTTTTGGCTACTACATCCGCGCCAGATTACAAATCATTTGGCGACCCAACATCTGACGTGGATTTGTCATCACCGTCAGTCACAACAGCGGCTTCTGGTCGCGTAGAGTCACCCCAAATCATTGCCACTCAGACACCTCGACTGTTTGGCTCGAGGAAATTTGTCCTCCAAGACGACCCCGCCACCTCCCATTCTTTTGAGTCATTCCCTGGTGTCCCGGATGGCATCTGGGAGGTGCAGTCGGGAGAGTCCAACCAGATGGTGCACATGAACGTCCTGATCACCTGCGTGTTCGCCGCCTTCCTGCTGGGGGCGCTGATCGCGGGCATGCTGGTGTACTGCTACCGCGACGCCTTCCTGCGCAAGCCGCGCAAGGTGCACAAGGACGCCGAGTCGGCAGAGTCGTGCACGGACTCCGCCGGCAGCTTCGCCAAGCTCCACGGCCTCTTCGACAGCCCCGTCAAGGAGTACCAGCCGAGCGACGACTCGCCCAAACTCTACACCAACCTGCTgagcggcggcggcggcaaGGACACGGCGCCCAACGGGGACACCAGGACCATGATCCTCAGCGGCCAGTGCCAGCCGCCGGAGCTGGCGGCCCTGCCCACGCCCGAGTCCACCCCCGTCCTCCAGCAGAAGAGCCTGCAGCCCGTGAAGAGCCAgtgggagaaggagaaggagaagtcCCAGGGCAACCAGGGCAACCAGGGCAAGGGCACCGCCGCCGCCCCCCGCCGCGACTCTCCCCCGAAGAGCCCCCAGTACTTCCCCTCCAGCCCGCCCCCCCactcgcccccgcccccgcacgCCCTCATCCCCAGCGCCGTGGTGCTGCCCAACGCCACGCACGACTACCGCGCCTCCTTCGCCAACGCGCCCGACGTCCTGCGCTGCGACAGGAAGCCCCAGAGCGGAGCGGAGCAGCCCGTCGCCAACCCGCCGCGGGGGCGGGCGCAAGGAGCACCACCGGCGCTCGGTGGACACGCGCAACACGCTCAACGACCTGCTGAAGCACCTGAGCGACAGCGGGGGCGGCGGGAACGGCAGCCATGGCAGCAACGGCGGGAACCCTAA

Transcript

AAFF_T00428190

GGCTACCCTGGTACCATTTGATCGCTCTTCAGCTTTGAAGATCAGAAAGCCGAAAACTGGGCCCGCGGAGGACGGATAGATTTGACGAGTGCGAAAGAAAATGTGCCCTTCTTTTTTGCATCGGAATTAATtttttggtggtgggggggggtcccCAACTGGATAAAGAAACAAAGTGATTCTGATTCGCAATGAAATCTCCATGGAGTGCATGTAAAAATATGTGGATGTGATCACATGGATTGATCAGAGAGAAGGAAACGTACTTCGGGATCTGAGGACCTGGCGATAGCTTTCGCGAATGGTTGGGAGCCCGCAGGTAGCATCGACTTTTTAGCGAAACAGGAAGTGTCAGCTCTGCGCGTGAGCCATGGGGCCGAGAGGACagctcctcctcagctctgcaCTCCTGGCGCTCGCTCACGTCTGGGCCGTCAGCTTCCCCGAGGACAGCGTCCCCGTCGACACCGTCGACTACCACTACTCAAAGCAGTATCCCGTATTCAGAGGTCGGCCCACCGGCAATGAATCACAGCACAGACTGGACTTTCAGCTGATGACAAAAATTCAAGACACGCTCTTCATCGCTGGCAGGGACCAGGTCTACTTAGTGAGTTTGCGGGAGACTTACAGGACTGAGATCATCCCATACCGGAAGCTGACGTGGAGATCGGGCCAAGGGGACCGCGAAACGTGCGCCATGAAGGGGAAGCACAGGgACGAGTGCCATAATTTTATCAAAGTGCTGGTGCCCAGGAATGACGATCTGGTGTTCATCTGCGGCACCAACGGCTTTAACCCCATGTGCAGATACTACCGGTTGGATAACCTGGAGTTTGACGGGGAAGAGATCAGCGGGCTGGCGCGGTGCCCGTTTGATGCCAAGCAGACCAACGTCGCCCTCTTCGCCGATGGCAAGCTCTACTCGGCCACAGTGGCGGACTTCCTGGCCAGCGATGCCGTCATCTACCGCAGCATGGGCGACGGGTCGGCCCTCAGGACCATCAAGTACGACTCCAAGTGGTTAAAAGaaccacacttccTGCACGCCGTGGATTATGGGAATTACGTCTACTTCTTCTTCAGGGAAATCGCGGCCGAGCACAACAACTTGGGAAAGGCGGTGTATTCCCGCGTGGCGCGCATATGCAAGAACGACGTGGGCGGGTCCCAGCGCGTGCTGGAGAAGCACTGGACCTCGTTCGTCAAGGCGCGCCTCAACTGCTCCGTTCCGGGGGAGTCCTTCTTCTACTTCGACGTCCTGCAGTCCATCACGGACATCATCGAGATCAACGGGATTCCCACTGTTGTCGGCGTGTTCACCACACAGCTCAACAGCATCCCCGGCTCGGCGGTTTGCGCCTTCTCCATGGTGGATATCGAGAAGGTGTTCAGGGGCCGCTTCAAAGAGCAGAAGACAGCCGACTCCGTCTGGACCGCTTTCCCCGAGGACAGGCTCCCGAGGCCCAGGCCAGGCTGCTGTGCGGGTAAGGGTTCGGCCGAGGGACACAAAACCTCCATCGAGTTCCCGGATGAGACGCTGCTCTTCATCAAGTCCCACCCTCTGATGGACGCCGCCGTGCCGTCGGTCAACGAGGAGCCCTGGTTCACCAAGACCCGCGTCAGGTACAGACTCACTGCCTTGGCCGTGGACGACTCGGCCGGCCCACACCGGAACTACACCGTGGTCTACGTCGGCTCGGAGGCGGGCGTGGTCCTCAAGGTCCTGGCGAAGACGTCGCCCTTCTCCCTGAACGACAGCGTGCTGCTGGAGGAGATCGACGCCTTCAACCGAGCAAAGTGCCTGTACGCCAGTGAGGAGGACCGGCGCATCGTGGCGCTGCACCTGGACCGAGAGACCCACGGCGTGTTCGTCGCCTTCTCCAGCTGCGTGGTCAGGCTTCCTCTCAGCCGCTGCGAGCGCCACAGCTCCTGCCACAAGTCTTGCATCGCGTCACGTGACCCGTACTGCGGGTGGACGCCACAGGGGTCGTGCGAGACCATCCAGCCAGGCGTGGTGTCTGGGTTCGAGCAGGACGTGGAGTTCGGAAACACGGCACAGCTGGGCGACTGTCACGAAGTTTTGGCTACTACATCCGCGCCAGATTACAAATCATTTGGCGACCCAACATCTGACGTGGATTTGTCATCACCGTCAGTCACAACAGCGGCTTCTGGTCGCGTAGAGTCACCCCAAATCATTGCCACTCAGACACCTCGACTGTTTGGCTCGAGGAAATTTGTCCTCCAAGACGACCCCGCCACCTCCCATTCTTTTGAGTCATTCCCTGGTGTCCCGGATGGCATCTGGGAGGTGCAGTCGGGAGAGTCCAACCAGATGGTGCACATGAACGTCCTGATCACCTGCGTGTTCGCCGCCTTCCTGCTGGGGGCGCTGATCGCGGGCATGCTGGTGTACTGCTACCGCGACGCCTTCCTGCGCAAGCCGCGCAAGGTGCACAAGGACGCCGAGTCGGCAGAGTCGTGCACGGACTCCGCCGGCAGCTTCGCCAAGCTCCACGGCCTCTTCGACAGCCCCGTCAAGGAGTACCAGCCGAGCGACGACTCGCCCAAACTCTACACCAACCTGCTgagcggcggcggcggcaaGGACACGGCGCCCAACGGGGACACCAGGACCATGATCCTCAGCGGCCAGTGCCAGCCGCCGGAGCTGGCGGCCCTGCCCACGCCCGAGTCCACCCCCGTCCTCCAGCAGAAGAGCCTGCAGCCCGTGAAGAGCCAgtgggagaaggagaaggagaagtcCCAGGGCAACCAGGGCAACCAGGGCAAGGGCACCGCCGCCGCCCCCCGCCGCGACTCTCCCCCGAAGAGCCCCCAGTACTTCCCCTCCAGCCCGCCCCCCCactcgcccccgcccccgcacgCCCTCATCCCCAGCGCCGTGGTGCTGCCCAACGCCACGCACGACTACCGCGCCTCCTTCGCCAACGCGCCCGACGTCCTGCGCTGCGACAGGAAGCCCCAGAGCGGAGCGGAGCAGCCCGTCGCCAACCCGCCGCGGGGGCGGGCGCAAGGAGCACCACCGGCGCTCGGTGGACACGCGCAACACGCTCAACGACCTGCTGAAGCACCTGAGCGACAGCGGGGGCGGCGGGAACGGCAGCCATGGCAGCAACGGCGGGAACCCTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01403	Sema	Sema domain	Repeat	Interproscan
PF01437	PSI	Plexin repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001627	Domain	Sema domain	Interproscan
IPR002165	Repeat	Plexin repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR027231	Family	Semaphorin	Interproscan
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0050919	Biological Process	negative chemotaxis	Interproscan
GO:0071526	Biological Process	semaphorin-plexin signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-