Gene detail

Detailed information of KAJ8397989.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8397989.1	TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED	AAFF_1.1_unplaced_94	3009264	3031007	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00433360

ATGGTTTGGACTAAACTGCCAACAACCAAGAGCACAAGGATGGATGCACAGAATACTTCAGTCAAGGGGGGTGTTTCCATACTTCACAAGGTTCTACAGGGGAAACATCACTATGAAGTGGATCATGTGGTGAAGTATAAAAAAAGCTATCTGGCTGACGCTGGTATAAGAAAAGGAGATACAATTCTGAAGATCAATGGGCAGGACTTGAAGGATCTGACTCCAGAAATGTTTGCAGAGTTGCTGACAGAGGTTTCGCCCATGCTGACAGTGCACCAGTCCAGCACAGATACCCTGAAGGAGAAGTGCCAGGAGCAGAGAGGGATGTATCCAGTCAACAAGGAGAAGATCTTCATGAGCTTCAACAGCCTGGAGATGATCCAGGAGGACAAGCCAGAAAAGAATGGAGGGGAAGACGACAGGAGGAGCTCCAAGGGGGACCAGCCGCAGCCTGGTGGAGGGGACGAGTCTCCTTTTGGCGACGACTCTGGTGGGCTGGACGACCTGTTGATAGTCTCCATGACGAAGACCAGCATAACCATAGTGAAGGGGCGGGGGTGTGAGGCTGGGAGCCCCTGCCATGACTGTGGGGGCACTGCATGCACCTTCAACGATGTGGTGATGGTGGCAGAATCCAGCAGCATCACCCTGGTGTCCAGGGGAATTACAAATTTTTCTCAAGACAGAGTATGGGACAGTATTCTCATTCGAAGTTTAGTGCATGACAGGTACATCCACAACAGGAACAGAGTGGCCACCACGTCAAGAGAAGCCCAGAGAAATGCAGAAATCTCAATCTATTACTACAAATCGGACTGTATGGATGACGACTTCCCGGGAATGCCTGTTGTGTTGAATTTTACTGCCACAGAGAGCTTTCTGAAATGCAGCAGCAATGATGACAAGGCCACGCTTAGCATAGAGAGTTGTGATAAGAGCAAGCTGAAGTGCATCACCATTGGAGATGAAGAAACCTGGCCCCAATATTATCGGTTTGTGCAAGAGGTTTTTGAGTATAAAGGATTCACAATGCAGAATAAGAAGACCAAAGTGGCCTCAAAGGCGAAAGTGGGGAAAGTCGGGTCGAAGAATAAAGATGACGCCCCTCATGAGCTAGAAAGTCAGTTTGTCCTACGACTCCCTTCGGAATATGCCTCCACAGTGAGAAGAATCGCACAGTCGGGGAGCGTGAACCTCAAAGATAGACTCACTATAGAGCTACATGCTGACGGTCGCCATGGGATAGTGAGAGTGGATCGTGTCCCTTTAGCGTGCAAGCTCGTTGACTTGCCCTGCATTCTCGAGTCTCTGAAAACCGTGGACAAGAAAACCTTCTACAAGACTGCTGATGTTTGTCAGATGTTGGTTTGCACTGTAGATGGAGACCTCTACCCACCTTTAGAGGAGCCTACTGGCACCACTGACCCCAAGAGCAAGAAGAAGGACAAGGATAAAGACAAGAAGTTTGTGTGGAACCACGGAATCACTTGCCCTTTAAAGAACACGAGGAAAAGGAGATTCAGGAAGACTGCAAAAAAGAAGTACATCGAGTCCCCCGATGTGGAAAAGGAGGTGAAGAGACTGCTGAGCACAGATGCAGAGGCTGTCAGTGTCCGATGGGAGGTGATCGCAGAGGACGAGACCAAGGAGGCGGATAACCATGGATCTCTGGCCAACCTGGACTCCTCTCCTGGGACCTCGGGGCACAAGATGGGCCACGGATCCTCAGCCCAACGCGACGAGCTGCGCGAGATCTTCAACgacatcagcagcagcagcgatgACGAGGAGGACGAGGGGGACCGCCACGAGGACGAAGACCTCAACATCATGGACACGGAGGAGGACCTGGAGCGACAGCTGCAGGACAAGCTGAACGAGTCGGACGGGGCTCGGGACGAGAGCGACGGGAACAACCAGATCATGATGGAGTACCAGGTCCAGATCAATGGTGTGAAGACCAAGCTGCAGGAGACCCGCGCTCGCAAGAAACAACAGGAGGACCTCATCATGAAGGTGGAGAACCAGGCGTTGAAGAATCGCTTCCAGGCCTTGCTGAATGAGATCATCCACCAGGAGGAGCGGGAAATGGAACAGCTGGCCTCCTTGCAAGAGCAGTTGGACTCCCTGATCGAGAAgtga

Transcript

AAFF_T00433360

aaacagaagtgCATGTGTTACATCCTCATGTAAATGAGGACAAGCCTATATATGATACAAGGTCTTCATGGTTTGGACTAAACTGCCAACAACCAAGAGCACAAGGATGGATGCACAGAATACTTCAGTCAAGGGGGGTGTTTCCATACTTCACAAGGTTCTACAGGGGAAACATCACTATGAAGTGGATCATGTGGTGAAGTATAAAAAAAGCTATCTGGCTGACGCTGGTATAAGAAAAGGAGATACAATTCTGAAGATCAATGGGCAGGACTTGAAGGATCTGACTCCAGAAATGTTTGCAGAGTTGCTGACAGAGGTTTCGCCCATGCTGACAGTGCACCAGTCCAGCACAGATACCCTGAAGGAGAAGTGCCAGGAGCAGAGAGGGATGTATCCAGTCAACAAGGAGAAGATCTTCATGAGCTTCAACAGCCTGGAGATGATCCAGGAGGACAAGCCAGAAAAGAATGGAGGGGAAGACGACAGGAGGAGCTCCAAGGGGGACCAGCCGCAGCCTGGTGGAGGGGACGAGTCTCCTTTTGGCGACGACTCTGGTGGGCTGGACGACCTGTTGATAGTCTCCATGACGAAGACCAGCATAACCATAGTGAAGGGGCGGGGGTGTGAGGCTGGGAGCCCCTGCCATGACTGTGGGGGCACTGCATGCACCTTCAACGATGTGGTGATGGTGGCAGAATCCAGCAGCATCACCCTGGTGTCCAGGGGAATTACAAATTTTTCTCAAGACAGAGTATGGGACAGTATTCTCATTCGAAGTTTAGTGCATGACAGGTACATCCACAACAGGAACAGAGTGGCCACCACGTCAAGAGAAGCCCAGAGAAATGCAGAAATCTCAATCTATTACTACAAATCGGACTGTATGGATGACGACTTCCCGGGAATGCCTGTTGTGTTGAATTTTACTGCCACAGAGAGCTTTCTGAAATGCAGCAGCAATGATGACAAGGCCACGCTTAGCATAGAGAGTTGTGATAAGAGCAAGCTGAAGTGCATCACCATTGGAGATGAAGAAACCTGGCCCCAATATTATCGGTTTGTGCAAGAGGTTTTTGAGTATAAAGGATTCACAATGCAGAATAAGAAGACCAAAGTGGCCTCAAAGGCGAAAGTGGGGAAAGTCGGGTCGAAGAATAAAGATGACGCCCCTCATGAGCTAGAAAGTCAGTTTGTCCTACGACTCCCTTCGGAATATGCCTCCACAGTGAGAAGAATCGCACAGTCGGGGAGCGTGAACCTCAAAGATAGACTCACTATAGAGCTACATGCTGACGGTCGCCATGGGATAGTGAGAGTGGATCGTGTCCCTTTAGCGTGCAAGCTCGTTGACTTGCCCTGCATTCTCGAGTCTCTGAAAACCGTGGACAAGAAAACCTTCTACAAGACTGCTGATGTTTGTCAGATGTTGGTTTGCACTGTAGATGGAGACCTCTACCCACCTTTAGAGGAGCCTACTGGCACCACTGACCCCAAGAGCAAGAAGAAGGACAAGGATAAAGACAAGAAGTTTGTGTGGAACCACGGAATCACTTGCCCTTTAAAGAACACGAGGAAAAGGAGATTCAGGAAGACTGCAAAAAAGAAGTACATCGAGTCCCCCGATGTGGAAAAGGAGGTGAAGAGACTGCTGAGCACAGATGCAGAGGCTGTCAGTGTCCGATGGGAGGTGATCGCAGAGGACGAGACCAAGGAGGCGGATAACCATGGATCTCTGGCCAACCTGGACTCCTCTCCTGGGACCTCGGGGCACAAGATGGGCCACGGATCCTCAGCCCAACGCGACGAGCTGCGCGAGATCTTCAACgacatcagcagcagcagcgatgACGAGGAGGACGAGGGGGACCGCCACGAGGACGAAGACCTCAACATCATGGACACGGAGGAGGACCTGGAGCGACAGCTGCAGGACAAGCTGAACGAGTCGGACGGGGCTCGGGACGAGAGCGACGGGAACAACCAGATCATGATGGAGTACCAGGTCCAGATCAATGGTGTGAAGACCAAGCTGCAGGAGACCCGCGCTCGCAAGAAACAACAGGAGGACCTCATCATGAAGGTGGAGAACCAGGCGTTGAAGAATCGCTTCCAGGCCTTGCTGAATGAGATCATCCACCAGGAGGAGCGGGAAATGGAACAGCTGGCCTCCTTGCAAGAGCAGTTGGACTCCCTGATCGAGAAgtgaccagcagagggcagcaaagACAAGGCACCTTGTGCAGACCTTGTGCAGAGAGATCATGAAACCAGCCCGCCATAAATCTCCCCACCATTCGGCCAATAGAGGGCTGACTGTCACTCGCACTGCAATTTTAAATGGACTCAAATCATAAAATCCTTGATAGGAGTATTTTCTTTCCCACATTTTGAATTTTATATATTCAGTGTTTCTGTGGCATTATTCAGTCTGTCTCTAAACACATCTGTTGTTATGCTTTTGAGCCTTAGAAAATAGCTCGTGTCAGTCCTACAATAAAACATGAATGTGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF04658	TAFII55_N	TAFII55 protein conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478	Domain	PDZ domain	Interproscan
IPR006751	Domain	TAFII55 protein, conserved region	Interproscan
IPR008996	Homologous_superfamily	Cytokine IL1/FGF	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR037817	Family	Transcription initiation factor TFIID subunit 7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12228	TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0051123	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-