Gene detail

Detailed information of KAJ8397687.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8397687.1	NUCLEAR RECEPTOR COACTIVATOR	AAFF_1.1_unplaced_96	3492702	3506128	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00436860

ATGCTCCCGTTCGGAGAGGCGGGAGGGCGCGACCCTGACCTTTGTCCCGCAtgtgtgtgccagttccccagcGCCGACCTGGACACGCTGAACCAGCTGCTGCCTGCCCTGAGGGGCGCTCCGGGGGCCAAGCTGGCCGAGGAGCAGAGCGCGTCCCAGCCAGCGGAGGCCAACATTCCCCGGGGCGTGAGCGTCAAGCAGGAGGCGCCCAGCACGCCGGGCcgagCGTTCGCCGACGCCCCTGGCCTCCAAAGCCAGTCGCCCTTCGAGTTCTgcagcccctccacccccagccAGGGCCAGGGAGACCCCTTCCAGCCCCCCAAAGACGGCAGCCCCTACCCCGAGGCGGGGCACGGCAACACCTTCAGCACCAGCACGGGGCTGTCCAAGGGGGAGCTGGCAGGGTCCCAGCAGTTCCCGCCGGCCCCGTTGGCTGAGGCCATGCCTTTCGAGGGGAACTTGGATAACGTGACCCAGGGCTCTCTGACTTCCCCCCAGGAgCAGTGCACCCCCTGTCCTCTGGATGAGCTGCtgtgcccccccaccaccccagaGGGCCGCAGCGATGAGAAGGCCCTCCTGGACCAGCTGGTGTCCTTCCTGAGTGGCACAGACGAGAGTGAGCTGGCAGAGCTGGACCGGGCGCTGGGCATTGATAAACTCGTACAGGGTGGCTGCCTGGATCCCCTCTCTCAACGGTTCCCCGGCCAGCCCCCGCAGACAGCCCCCATGCCGGTGGACCCCAAGCTGCCCGGCTACCCGTCCCAGTTCCCCCCTGGCTCCTCTCAGTTCCCGCCCGAAATGGGCCGAGCGCAGGGGATGGGGTTCGGAGCGCCGCGGGCTCCGTTCGCCGTCGGGATGAACATGGCGCTGCGGCCCGGCATGGCCAGAGCCCCCGGCCTGCCCAACCAGCTGAGACTGCAGCTTCAACAGCGGCTGCAGGGACAACAGCAGCTCCTGCAGCAGAACAGACTGGCGGCCATGGGTCAGTTCCCAGGAGGGGGTCATGTTGCCATGGGGATGCCCCAGGGCATGCAGCAGACACAAATGCCATCACAGCCTCCCCTCAATGCACAGATGCTGGCGCAGAGGCAGCGAGAGCTCTACAGCTTCCAGCACCGGCAGAGGCAGCTCCTGCAGCAGAAGcCACTTCAACCCCATGGGGGGACCCCCGGACCCCAAGCTGGCAGGCAGGGGCCCTATGGCAAACCCAGGCATGATGGGAAATATACAGGCACAGTTTGGGGCACTGTCAACTCCCCTGTGCAGCCCAGCCTCTTCCAGCAGTTTGGAGGACCAGGAATggtccagcagggggagccaCCCTTTCCCCCGGCCCTCAGCCCCACCAGCCCCCTGCTTTCGCCACAGATGTCCACCTCCCAGAGTCCTCTGCTCCAGCAGACACAGCCACCTCCTGGCTACCAGTCACCTGACATGAAGGGCTGGCAACAGGGTGGCATGGGCAACAACAGCATCTACAACCAGTCTGGACAGAATGCGCCTCAGGCCTTCGGGCAGCAGGGCGTGTACAACAACATGAGCATTACAGTGTCAATGGCTGGAGGGTCCGGGGGCATGGCCTCCTTACCTCCCATGGGACCAACTGTTGGTATGGGCAACAGCAACCTGGGCAACGTCAGCTCCATGTGCAATGATCAGGTACAACAGGTTCAAGTGTTTGCTGATGTCCAGTGTACCGTTAACCTGGTTGGTAGTGACTCCTATTTGAACCAGTCTGGGCCAATGGGATCACAGAAAGGGGCAACAGGAGCACAGAGTGCCCAGTCACAGCAGAAAAGCCTCCTCCAGCAGCTCTTAACTGAATGACACTGTCACTGAGTGCTGGAAGCAGTTTTTCCCACAGTGagctatttatattttttacattttggtttcAAATTTTCAGCAGGATTGGTTCTGAGAGCGTGGTATTTTGGGGGGGACGGGGGAAGGGAGGTGAGAGGATATCTCAGCCTGTGGGTAGAACGCTCATTCCTGGTTACCTATTCTtaaagaaatataataataataaataaaaatctgcttCCTGATTGGAGAAGGATCATGTTCCAGATTTGCCAAGTTAAGGACCTGCTTCCTGATTGGCTGTGCATTGTGGGGCAGGCACAGTGCTCCTTGGAGAGAGACAGCAGGGTTCGGCTTGGTGCGGTCTTTGCCAACCGGTGCGATGACGCAGGGGCACAACTCTGACATTTCTTCTGTTGTGCAAGGAAAGCTCAGTTTCAGCGGGATCTGTCACTGATTGGCTCTCCACAGCAGTGCCTGGTGGGAGGACTTTCccagtttttaggtttttttcttccttttttctcaATGAATCAGATCAAGAATGGCCAGGATGGGAGACTATACTGTTGCACAATGTTTGCAACAGAATTTCCTGGGGGAACTGTTATAAATACTAAACTACAAACTGTTCTATAAAAGTCTCATTTTTTCCCAGCAGCTGTGAATAAGGGCCACTCTGGCTCTCCTTGGCCTATCAGTGTTGTTTGCCATGTGTGCCAATCAGGCTGGTAGTATTGTACAATATATGGACACATTTGGGATGAGCTAACACTTTCTACTTTCCTTTTAACGTTGTTGAATTATTCTAATGGCAACAGTCGTTTTGAAGTCAAACTCACAAATATCGTTGGATTTGAAGCAGGACATTTTTTGCTGTTTAATTTGAGAATTGGTACCCGTCTatgctttattgtttttttttttgtttgtttttttctaaagGCGCAATGTTTTGACATCAGGAGAACGCGGACATTTACAAATGTAACCCAGCAAAATGTTGCCGTTGTGGGGATACTCGCTCTCTGCTCATTTAATGTGAAGAGGAAAAGATTGTTTAGAATTAGAATGTTCAGTTTTGATTAGGCTAGCtttgctctttttttaattatttttctttctttgttttctctCCCCACTACGAGGTGTTGCAGTCTCACACGATCAACTGCTCAACAGAAACCGATTTGGTTTTACgataatgttacattttgagTTGGGATTTGTTCCCAGACACATCAGTCATCTCAGTTCAAAGCAAGGTCTGTAAAGGGGTATTGGAGACACCGTTCTCAGACCCTTTGCAGACTCTTCTCTACAGTTAGCTCTTGAGGACGGCTCCAGACCTCACCCCATTGGCTGCACACTACAGCTCGTAGACCGCTCACGTGACTACTGCCGCCCAGTCAGACACTGTCGCTCAGCGCCAACCTCTGTGGACGTTGACATAACACTATTGCTAAAGGTTCTCGGCAGCAGATACCATTTTAACaaactacatttaaaaacaaacaaaaaagctatTGATAAGCAATAACCGTAACAAAAGAGATAAGGCAAGATTTGGCAAGGCAGATTTTTGGATATCGACGGTGAAAAGAAAACCAACAGtctgttcatttcttttttgcttTGCGTGTCAGAATAGCTCTGACCAAGGAAAGGCTTTAAAAAGGAGAATTCCACAGTCCAAATAACTTCTCGTCTGAGGCGTCACTGTGTACATACAAGGTatttcacaaagtctgcaacATTACCAGAGCACAGCTGAAAAGGGGGTACACAGAAGGTGGTCCTGAGTGTCGCGCGCACCATCGTACCCGTACCCACCAGTTTTGGTCATACTCCAACAATgttatataatttgtgaatCACTTTGTGTAAAGTTTATATGGGCTGCGTttgagtgtgtgcgcgcgcgtgctctgtatatacagtggctaTACATCCTTATGCTCCGTACTTCTACTGTCTATCGCACTCGCCACCTTTTCAGTTTAGAAAGCAACTGGCATTGGCGATCTTGGCACCAAAACTAGTCAAAAATGTGATTCTTATTTGGAAGACGTACCAGAAAATGAATCGTTCCTATGCCTTAAGTCTTCCTGTCTGTTTTGAATCccctttgtgtgcctgtgtttgacGGTGAAcagtctctctcagtgtgtatTTTGCACCCATTCTTTGTACAATTTATGAGGTGTGTAGaacacctctttttttttttttacgacacTTCACTCCTTAGCAACACCCCCAGAAAAGAAATACAAGAAAAAGCTCTGGTTATCACTTTCATCACTTTACTGCTGATGCACAGCACaatatttttgtctttaaaGATGAATAGTTGGGTAACAGAAATATTCAGGAAATGAGAATAGTGTGTAATGGTATATTTACACTTAATCAGAAGCATTAAGTTGTTGCCTGTTTAATTTAGCTGTGGCCCTGACAAAGAAGAGGTGTGATGTAGTAGACTATATTGGTGGAGTATAAGGATGTATAGAGCCACATggatatatgtaaatatatatttgcatcaaaaaaaaagtggaagcAATAAATGAGCAGAGTGTTGGTATATGGGTAATTGAGataattctgtatttatttagaatATTGACTTATTAAATTgttccaatccaccaaacaccCAATTAAGTAAGTTTTCCTTTAAAAACAGAATCATAATATGTCTCTTATTTTCTATTAAATTAGGAATAGACATTGTTTTAGAAGATATCTTCCTTATGAAATGCAATTAATGGGATTCACTTCAGTTTTTGATCGCCCACCAGTCTTAATTACTACTGTTGCAAGTACATTACTGCACTGTTTAGCAGTGCCCAAATACAACTATATATCATTTTGCTTGCAAAATCATTGTGGTGGCAAGTACAATCATTTTTCAATTTGCCTaccacagggggaaaaaaaagttaaatgggATTCCACTACAGTATAattgttttaaagaaaaataatctgTATAACAGATAATATCTGTTGAGAATTGAAGATATGTAATACTCTAGAAGTGTGCATGGTGGTGGTTACTTGCttccattttttttaagtatggctgtgtgagtgtgtggatgtaAGTGATTAATACTGTATATCTTGTGTTTCAAATGGAATAGGAAAAGAAATGTCCTGATTTGATTTCTTCTATCTTTTTAGATACCTGCATATTACCTGTGGGTGTTAAGGTTGCTCTATATGCGAGAGAATGGTTTAGCGACTGCTGAATGTGATTTTACAGAGAGAGAAGCAGCAAGGACTGGCTTTTGTACgggttaatttttttaaaaaggccatATTATTTAATTTCTCTGTTGTCAAAGGTTTAAACAGATCTGAGAAAGTGGAACCTTGGTTTTAAGAGAGCACTGCTTGTGTATTCTAATGGGGTTTTGTTCACTCCTCACCAGTACAGATCTAGTTTCTACTTCTAGTAAGTGCAATCCTGTCGATGAAGCATGATTGCATGTTAAGAAATAATGACCAAAGCTTCAATATGTTGAAAATTGTATCGTATGCAAGCCTCGGGTTGACTGGAGGAGACAAAACATTGCGTtaacattgtaaaaatatatgataaAAATAATCCCATAATCCAATATGTATAAATAGCCTGTTGATCAACAGTAATAGTGTGTGGTATACTGTTTGTGAAgtgttatgctttttttttttttttctttgctttttcttttccttttttaaacctCTAAGAAAAATGACTTGCTGCCTGACTCCCATTCTCCGAAGATACTGACAAGCGATCTATCAGTCTTAGCTTTCGGACTGTATTTCTAGTCTGTGGAGTTTCCCAAGGttagaacccccccccccaggatcTGCCTCCTGCAGCCACTGGTGCAGGCAAATCAAATGAAGCGAAATGAACAGAAGCCTTAAGGGCAGACAGCGCAGTGGATATCGACAGGAAGAGCAGATACAGAAGCTAGCTATGCACCTTAAATACAAACACGATTCAAGTGCTTAAATTGACACTAGAATCAGAATAATCAGATCTTTTATTACGCTGTGTATTCTTAGTAATCACCTTTTTGGCAACTATACAAATCAAAAGACTGGTTgcttttcttagtttttttactcacaaaatgcattatttgatGTTTGGAACTGGAGTTTCTGAACGATTTATTAAATGAAACCAATGATGCagattattcatattttaaatttatataaattatattattatatttgaatttatttagcTGAACACTTTATACCAAATTTGAGGTGCCTCTTGTACATATTTTCTGCATTTAGAGGACTGATCCTTAATGTTTGATTAAAATGATCTTGTTAATGAGGAATTTCTTATATTATCCTTTGTAAAATAAGTATGCTgtattttacataatttttttactgaaatctaaATATTCCAGGCATTTACAGGTAAATACAATCTAGTTTTTGCACTTTATATCTAAAATTCAAAGGAAAAGAGGCCATTGCGATAAATAGTCACGTCCAAATTAGATCGTTGCTGCATTAAACGAATTAGCCCCTGAATGTAATCAGAAGTATAAGTGATTTTACTCCTTCAGAAGTATTCCTAGAATATCTCAGGTTCTTTGAAACCTTGCTGTTGTCCTTACTCATTCATAATATTGAAAATGGAAGCTAGCTCCCATCTCTTAGTAGTTGAATAAATAGCTATTTTTTCTGCTACAGATCCATAGCTGATAGCTATGCTCAACTTCATGTTTCAGGtatccttccccctctccataAACTACTTTATGTTGATTTTTACTGTAGCTTTTAacattgtattttaaaacattcctttacaaaaaaaaaaaaaaagagaaaaaaaaatctgttttcagCATTTGACTGTCACTGTTTCTGCTCTTTTAAGTCTGTAATATAATATCTGTAGCATACTTAGCAATGATCTTTTCCAGACCACCTTCAACAATCGTGTCTTCTAGTTTGCTGacatcctttttttgtttttaatcactTTCTTTTTGATAACCTACTGCTTGCTGTACAACTATGCTCCCTTTATAATGCTTTTTTCTCACCAAGTACCACACCCCTAACTATAGAGGTAGTATTTCTCCAGCGTCTGAAAAACTTAGGAGCAACTGTTTGTCTGAGAAATAATGCTTGTCAAGTATTGTAAATGCTGCCTTATTGATACTGATATTGGTTGTGGTTGTTCAGACAAGTTGAGAGCTTGTCTGTGTCTCTCCATTAGAACAGCAATGATCTCTTGAAACAAGGTTCCACTTTTTCCCtgtaaaattaatataaataaatatatatattatacattttactaATTTTGTCCAGTTTTGTATATTATACTTGCATATCTTTGAATGGAAAGGCACCGTAACAGCTGTGTGGGACACCATGAATGAAGATGTATCTGGGAGGGTTGTGTATGGTGTCCTGTGTCTAGTCTTTCCTGGGAAATTGTACCTTGGTTATTAAGTAGACAATCAACCATATGCTGGGTCCAGCACCTTCACAAATGTCTTGTAGGCTGATCTGATGaaaatgcatttcacacctattCAAGGAATCTACTCCGTCACTACACAGTCTTACTTCTCAGTTCAGTAATGGGAGTGTGcagaaatgacacacacacacacacacacacacacacacacacacacacactagctcATGCATACAGCCCCACCAATGCTTTTTGACAGTAGGTGGAGTATGGTTGGATCAGTCAGACTGCAGTGATGACCTTGAAAGGAATGATGCTTTTGACCAGCAAAATCTCTCTTTTAACATCGGTGAATGTGAAAATGCAAGACATTGCAATAAAAGCACCGTTTAAAGCATAATTTCACAAAACTCATTCTGTATTTCTTCACTTGTATTCCCCTCAAGTCTTATTGCTACTACTATCTGCCTTGATTCCCATGGGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08815	Nuc_rec_co-act	Nuclear receptor coactivator	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009110	Homologous_superfamily	Nuclear receptor coactivator, interlocking	Interproscan
IPR010011	Domain	Nuclear receptor coactivator, DUF1518	Interproscan
IPR014920	Domain	Nuclear receptor coactivator, Ncoa-type, interlocking	Interproscan
IPR017426	Family	Nuclear receptor coactivator	Interproscan
IPR037077	Homologous_superfamily	Nuclear receptor coactivator, Ncoa-type, interlocking domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10684	NUCLEAR RECEPTOR COACTIVATOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016922	Molecular Function	nuclear receptor binding	Interproscan
GO:0030374	Molecular Function	nuclear receptor coactivator activity	Interproscan
GO:0032870	Biological Process	cellular response to hormone stimulus	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-