Gene detail

Detailed information of KAJ8397262.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8397262.1	COLLAGEN ALPHA	AAFF_1.1_unplaced_99	2198804	2205241	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00440960

CAGGTGAGGAAGGGGACCCTGGAGGCCGGGTCCAAAAGGGTTCCCTGGGAGTCCAGGGCCCGCGGGGCCACCAGGAGTGAAAGGACCCGATGTGTTTGCGAGTGCACAAATCGTCCCGGGGGACCAGGGGTGCCAGGGCCTCAAGGGCAGACGGGAGAGCAGGGGACCCCCGGGCAGCCTGGACCCAGAGGATTAGCAGGACCCCCAGGTTTTGGAGGGCCCTTTGGCCTCGAAGGTGGCCCAGGGCCCCCAGGGTTCCAGGGACTGAAGGGCGACAGAGGGTTCCCAGGAGAGCCGGGGCTGCAGGGGTTTCTGGGCCTCCCGGGTCACAAAGGTATTCGTGGACCTCCAGGAGACTTAGTCCAAGGCCCGGGGTGGGATGGCTACCTGTTCACTCGACACAGCCAGAAGCATCAGGTGCCGCGGTGTCCTGAGGGCAGCAACTTCATCTACTCTGGCTACTCCCTCCTCTATATCAATGGCAACAGCAGAGGACATGGCCAAGACCTTGgTTCTCTGGGAAGCTGCCTGGTCCGGTTCTCCACCATGCCCTTCCTCTACTGCAACCTTGACAGCACCTGTCACTATGCCTCCCGTAATGACTACTCCTATTGGCTGTCCTCTGACGAACCAATGCCCAATGACATGGCACTCATCCCAGCTGAATCGGTGGAGCGATACATCAGCAGgtgTTCGGTGTGTGAGACCAGCGCCAATATAATCCCTGTTCATAGCCAGACAGATGAGATTCCTGACTGCCCCCGCGGATGGCATTCCCTGTGGACGGGCTACTCCTTCTTCATGCAAACGGGCGTGGGGTCAGAGGGCTCCAGCCAGCCACTGGCCTCTCCTGGGTCCTGTCTCGAGAAATTCACTAAAATCCCTTCCTTGGAGTGCCATGGGCGTGGCACCTGCAACTACTACAGTGACTCCTACAGTTACTGGCTGGCCTCCCTTGATCCCAACAACATGTTCAGCCAACCTGTTGCTCGAACAGTGAAGCAAGACCTCCCGGGGAACCTTATCAGTCGCTGCCGTGTGTGCATGAAGCAGTGAACCCAGTCCCCAAAGTGGGACGAAGGCAGAGTCACGCCCCAGGCCAACAGGGGGCGCCAGAGAGACTGATCTGCCCACTGAACACATGAGACTCAATCATGGTGCTTGTCGCTTGTGAGGCACATCGCTACTCACGccactttagttttttttgttcagtattgtttttgtttttccgttgttgtcttttctttttccagATCATCGACTGGTACAAAATAGAAATGAGCCTTTTTGATTTTGGTGGAAATGTCCAGATGTTTGTCTTGGTATGATGTACTCTGAATGAGTGGGAGAAACATAATAATCTTTAGGGACCTCTCTCTTTACAATTCTGtaggccagatttactaagatgaTTGGCTTTACACAAaaaactcgcccacctgtcttactcgcccactcgcccacctgtcacacttcttggcgagctcgtgccggctctccctccccctggggcggacagccaatcgccacccagCCAGCCAGGGATTGAACTGaggggcaacctgcattccagacgaatgcttttaccgttacaccacccgaggccccttggtATGGTCATCTTGAAAGAAACCCCTCTAcaagaaatgctttaacatggggtgaagaCAATCACTGCATACCATTGTCACAattctaagggtatgagtgcacccaaaccatgacAGAAAAATGTGTCCCACACCATTGTGGAAacctccagaacccttcaggGCTAGAACActgttttgtttccattttttattcactacctgtatgtacagtatatgaagAAATGCATTTGGCATGTATCAAAAAGCACAGTGATGCTGTCTCAGATGTTATCTCTGAGACATTGTATTGTAGATATGTTCTTTTATACTGTAGTTCTTAATTGCGACTTTCACCCACAATGACCACTTATCAAATGCATATGGGTCTTTGCTGCCTGCTGTGAATGCACAAtactttagtaaatctggtccTGTCACTCCTTGTCCTTGATCTTCAAAGGTTGTTTTAAGGATAACCGACTCATAGTATGTCCTAAATGTTATTGAAAAAtagaatgttttaaaatgatcccATTTCTACAATCAGGTTGCTCACAAATGTCTGTTATGTTAGTATTGTTTGGGGGGAAAATTGTGACCAGGTTATGAAAGTTGAATCATGAGATTGGCTAATCATAGCACATAATTGAACAACATACTTAACACGTGAGAATGGGGGAAAGCAAATGGTAAAAGCAATCATGTAAAAATGGTAATAtcaatactaataataacaaaaataataaatagtttATGTGTGATGACATTGTCCCTCGTGCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01413	C4	C-terminal tandem repeated domain in type 4 procollagen	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001442	Domain	Collagen IV, non-collagenous	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR036954	Homologous_superfamily	Collagen IV, non-collagenous domain superfamily	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005581	Cellular Component	collagen trimer	Interproscan
GO:0005604	Cellular Component	basement membrane	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0030020	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-