Gene detail

Detailed information of KAJ8396534.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8396534.1	TRANSLATION ELONGATION FACTOR G-RELATED	AAFF_1.1_unplaced_105	65071	78739	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00016000

ATGTTACTTAGATCGGCAGTGACAAACACCTGGAGGTCTTTCAATGGCATTTCTGGGTGTACACATTGTTCGAAGAATGGAGCTCAAACGTGGTGCAGGTGGAGATTACAATGGAAAAGGAACTACAGACTTCTACCAGATGATGTCAAGTCAGTACGTTCAGTGGTCAACCCAGATATATCTAGAATCCGTAACATTGGCATCATGGCCCACATAGATGCTGGAAAGACAACCACTACTGAGAGAATGCTGTATTACTCTGGATACACTCGCGCATTAGGAGATGTTGATGATGGGGATACAGTGACAGATTTCAtggcacaggagagagagaggggaatcaCAATACAGTCGGCTGCTGTCACATTTGATTGGAAGGAGCACAGAATAAACCTCATAGATACTCCAGGGCATGTGGACTTCACAGTGGAAGTGGAGCGGGCTCTGCGTGTTCTGGATGGGGCTGTGGCTGTGTTTGATGCCTCAGCCGGAGTGGAGGCTCAGACTCTCACAGTGTGGCGTCAGGCTGATAAGCACTGCATACCTCGTCTCTGTTTCCTGAACAAGATGGACAAACCTGGAGCCAGCTTGCCTTATTCGATTGCGAGCATAAAGAAGAAACTGAAAGCCAACCCAGTCCTCCTGCAGATTCCCATTGGCAGCGGCAAAGGCTTCACAGGATTGGTCGATTTGATCACCAACGAGCGAGTGATGTGGAACGTCAAATCCCCCAGCGAGGACGGTCGAGTGTTTGAGAAGACGCCCCTCAGCTCCTCCGACAGCGCAGAGCTGTTGAGCGAGGCTAAAGAGGCCAGAGGCTGCCTGATAGAACAGGTTGCTGATCTGGACGATGAGTTCGCAGAGCTGCTGCTGGGAGAGTTCAGTGAGAACTTCGATGCCGTACCGTGTGAAGAGcTCAGAGCGGCGGTGCGTAGGGTAACTCTGGCCCATAAGGGGGTTCCTGTGCTTTGTGGGAGCGCTCTGAAGAACAAAGGGGTGCAGCCTTTACTGGACGCCATCACCGCCTACCTGCCCGCCCCCAACGAACGTCACCTCGACCTGGTGCGATGGTACAAGGACGACCTGTGTGCCCTGGCCTTCAAAGTCCTGCACGACAAACAGCGCGGCCCCCTGGTGTTCCTCCGGATCTACTCCGGGACCATGAAGGCCCAGTCTGCTGTCCACAACATCAACAGGAATGCCACGGAGAGGATGAGCCGCCTGCTCCTTCCATTCGCCGACCAGCACGTGGAGATTCCCTCACTCACGGCGGGGAACATCGCCCTCACTGTGGGCCTGAAACAGACGGTGACAGGGGACACCATCGTCTCCTCCAAGTCGTCGGCCGCCGCCGCAGAACGGCGGGCCCTGAAGGAGGACGAGAGGAGGAGGGGCacggaggggggagagggacgTCTGGTCCTGGCCGGGGTGGAGATCCCGGAACCCGTGTTCTTCTGTACCATCGAACCCCCCACCCTGGCCAAGCAAGCAGACTTGGAGCATGCCCTGACGTGTCTACAGAGGGAAGACCCCAGCCTGAAAGTGAGGACAGACACCGACTCCGGACAGACTATTCTTTGTGGAATGGGGGAACTCCACATTGAGATAATCCACGATCGGATCCGAAGAGAGTACAATATCGAGACTCACCTGGGCCCCCTGCAGGTGGCGTACAGAGAAACTGTCCTGCGGCCAGCGTCCACCACagACACACTGGACCGGACCCTGGGCGACCGGAGGCACGTGGTGACAGTGGGCCTCGCCGAGAGCGTGGAGGAGCAGCTTCCTCCCGACGTCAAAGTGGCGGTGGAGAATGGGATACAGAGCTCTTATCTCCAAGGGCCACTGCTTGGCTACCCAGTGCAGGCAGTGAGCACCACCGTGGAGTCCGTCAGCATCCAGTCTGGAACATCCATGGCCAtggtgtctgcctgtgtgtcacGCTGCATGCTAAAGGTTTTGAGGCAGGCAGGGTGTCAGCTGCTGGAGCCCCTGATGAGCCTGGAGATCACGGTGGGGGAGGAGCAGCTGAGCGCCGTGCTCGGAGACCTGGCGCAGAGACGCGGCGCCATCCACGACATCCAGGGTCGCCACGACAAcaagctgctgctggcctccgtGCCCCTGGCCGAGATGATGGGTTACTCCACTGTCCTGCGCACTTTGACCTCGGGAAACGCCACCTTCTCCCTGCAGCTGGCCAGCTACGAGGCCATGAGTCCCCAGGAGCAGAGCGTCGTCCTCAACAAAATGGCAGGGCTGGCGTGA

Transcript

AAFF_T00016000

ACTCTAAAGGGATGGCCTCAGTTTCCAGAGGATTTGTTATGACGAAACACCTCTTCGCATAACGTGAAGTCTAGCTAAATGTCAAACTGCAGTGCAGTGTTAGTCGAGTATTCTCCTGTCAGTTTCATAATTCACAATGAATATAAACGTAATTCGACTCAGATGTTAGAAGTTAAGAACGACTTTTATTTGGGGACcactttaaagaaaaataacgtAATGAGTATGTTGCTAGTGCAGGGGGAAGGAAGAAGGAATGTAGCTAGCTTTTGATAACATAGCATAGGTTAACTCATCCAACTTTTGATAATGTGTTTAGTTTTATGTTTAGAAAATAATAGGCAATCAGATATATTTAAACGGCCACTTTGATTACGACCTAGAAATATTTTAATACATAAATTGCAGAAAAAGACAGGAAGTTGTGATAAGAACTGGGCATGTTACTTAGATCGGCAGTGACAAACACCTGGAGGTCTTTCAATGGCATTTCTGGGTGTACACATTGTTCGAAGAATGGAGCTCAAACGTGGTGCAGGTGGAGATTACAATGGAAAAGGAACTACAGACTTCTACCAGATGATGTCAAGTCAGTACGTTCAGTGGTCAACCCAGATATATCTAGAATCCGTAACATTGGCATCATGGCCCACATAGATGCTGGAAAGACAACCACTACTGAGAGAATGCTGTATTACTCTGGATACACTCGCGCATTAGGAGATGTTGATGATGGGGATACAGTGACAGATTTCAtggcacaggagagagagaggggaatcaCAATACAGTCGGCTGCTGTCACATTTGATTGGAAGGAGCACAGAATAAACCTCATAGATACTCCAGGGCATGTGGACTTCACAGTGGAAGTGGAGCGGGCTCTGCGTGTTCTGGATGGGGCTGTGGCTGTGTTTGATGCCTCAGCCGGAGTGGAGGCTCAGACTCTCACAGTGTGGCGTCAGGCTGATAAGCACTGCATACCTCGTCTCTGTTTCCTGAACAAGATGGACAAACCTGGAGCCAGCTTGCCTTATTCGATTGCGAGCATAAAGAAGAAACTGAAAGCCAACCCAGTCCTCCTGCAGATTCCCATTGGCAGCGGCAAAGGCTTCACAGGATTGGTCGATTTGATCACCAACGAGCGAGTGATGTGGAACGTCAAATCCCCCAGCGAGGACGGTCGAGTGTTTGAGAAGACGCCCCTCAGCTCCTCCGACAGCGCAGAGCTGTTGAGCGAGGCTAAAGAGGCCAGAGGCTGCCTGATAGAACAGGTTGCTGATCTGGACGATGAGTTCGCAGAGCTGCTGCTGGGAGAGTTCAGTGAGAACTTCGATGCCGTACCGTGTGAAGAGcTCAGAGCGGCGGTGCGTAGGGTAACTCTGGCCCATAAGGGGGTTCCTGTGCTTTGTGGGAGCGCTCTGAAGAACAAAGGGGTGCAGCCTTTACTGGACGCCATCACCGCCTACCTGCCCGCCCCCAACGAACGTCACCTCGACCTGGTGCGATGGTACAAGGACGACCTGTGTGCCCTGGCCTTCAAAGTCCTGCACGACAAACAGCGCGGCCCCCTGGTGTTCCTCCGGATCTACTCCGGGACCATGAAGGCCCAGTCTGCTGTCCACAACATCAACAGGAATGCCACGGAGAGGATGAGCCGCCTGCTCCTTCCATTCGCCGACCAGCACGTGGAGATTCCCTCACTCACGGCGGGGAACATCGCCCTCACTGTGGGCCTGAAACAGACGGTGACAGGGGACACCATCGTCTCCTCCAAGTCGTCGGCCGCCGCCGCAGAACGGCGGGCCCTGAAGGAGGACGAGAGGAGGAGGGGCacggaggggggagagggacgTCTGGTCCTGGCCGGGGTGGAGATCCCGGAACCCGTGTTCTTCTGTACCATCGAACCCCCCACCCTGGCCAAGCAAGCAGACTTGGAGCATGCCCTGACGTGTCTACAGAGGGAAGACCCCAGCCTGAAAGTGAGGACAGACACCGACTCCGGACAGACTATTCTTTGTGGAATGGGGGAACTCCACATTGAGATAATCCACGATCGGATCCGAAGAGAGTACAATATCGAGACTCACCTGGGCCCCCTGCAGGTGGCGTACAGAGAAACTGTCCTGCGGCCAGCGTCCACCACagACACACTGGACCGGACCCTGGGCGACCGGAGGCACGTGGTGACAGTGGGCCTCGCCGAGAGCGTGGAGGAGCAGCTTCCTCCCGACGTCAAAGTGGCGGTGGAGAATGGGATACAGAGCTCTTATCTCCAAGGGCCACTGCTTGGCTACCCAGTGCAGGCAGTGAGCACCACCGTGGAGTCCGTCAGCATCCAGTCTGGAACATCCATGGCCAtggtgtctgcctgtgtgtcacGCTGCATGCTAAAGGTTTTGAGGCAGGCAGGGTGTCAGCTGCTGGAGCCCCTGATGAGCCTGGAGATCACGGTGGGGGAGGAGCAGCTGAGCGCCGTGCTCGGAGACCTGGCGCAGAGACGCGGCGCCATCCACGACATCCAGGGTCGCCACGACAAcaagctgctgctggcctccgtGCCCCTGGCCGAGATGATGGGTTACTCCACTGTCCTGCGCACTTTGACCTCGGGAAACGCCACCTTCTCCCTGCAGCTGGCCAGCTACGAGGCCATGAGTCCCCAGGAGCAGAGCGTCGTCCTCAACAAAATGGCAGGGCTGGCGTGACGCGCCTGAACGCCGCCTTCGGGGGTGCTATGGGCGTACCGTGATCATGTGACCCCCGTGCGGTGGAGGGCACACTTCAATCacagtcagtttacccgagCTTGGAGGGACAATTCCAGAAAACCCGCTGAAAATGTGCGTTATGGGCATGGGAATTGGCACCATTTTTTGAAGGCGATACGCCTGTGGATCAGAGCGTGAAGCGGGCGTGAAGTGTAATGAAAATTGATGCGTTCTTGCGTGATGACGTTGAAACGTGTAATCGCAGGCGCAGCCCACGCCCACGGGATTGCCAGGGCAACGTACGTTTATTTGATTCACATCTACAGTGTGTTTGGTGGGACCGTTGCTTAAGCACCCCGCAGACGGAACCGTTTTCTCAAGCACTGAAGATCAAGTCCACCGTTGAGCGTGCTGACTGGCATCTTCCTCGTGGAGGCCTTTCCGACTGGCTCCATACTGCGATCGTGACCGAGCAGAAGCTCACAAGCTGTAATCACCAGGCTATGAGGAGATCTGCCATCAACCcagactttcaaaaagcattttccCCTCAGATGTACATGGGCAAGGGGTTGTGCTAGTCAAAATGAACATCCTTGCTGTTGACATGAATAAAGAGAACATAAAATGTACACAa

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF00679	EFG_C	Elongation factor G C-terminus	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF14492	EFG_III	Elongation Factor G, domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000640	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR005517	Domain	Translation elongation factor EFG/EF2, domain IV	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR009022	Domain	Elongation factor G, domain III	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030851	Family	Ribosome-releasing factor 2, mitochondrial	Interproscan
IPR031157	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR035647	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR035649	Domain	EFG, domain V	Interproscan
IPR041095	Domain	Elongation Factor G, domain II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43261	TRANSLATION ELONGATION FACTOR G-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan
GO:0032790	Biological Process	ribosome disassembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-