Gene detail

Detailed information of KAJ8396403.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8396403.1	OX-2 MEMBRANE GLYCOPROTEIN	AAFF_1.1_unplaced_107	3044072	3047613	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00019800

GAGGTATCGCATCGGGAAATTCCAGTGTCGCTGATACTAACCTCCCGATCCAACGCGCTTACATTAAAGCGAGAGAACTCAAAGAAGTAGGAAGgctattacaaacacaaacatcatACTAACACAATGAATATCATAATGGCGGTTCTTGTTGTTGTGTTAAGCTCCACATTATCTCCAGTTCTCTCGGCGAAAGTCAGAGCTGACGGGACAACCACTGCTGACTTCGGCAAAGAAGCGTccttctcctgctctctctcggAATCGGATGGAGCTTCACAAGTCACATGGCAAAGACTAATCAAAGACAATCCCGTGGAGAAACTGGCCACCTTCAGCAAGCGTTTTGGAGCTAAGATCATGGACCCGTTCGGTGGCAGGATACATTTCACAGAAGCGTCGCTCAACTCTACatcaattataatcaagaaTGTGACTCCGTCGGATGAAGCCTGCTATATTTGTTCTTTTAGTGTTTACCCCAGTGGATCTATATGGAAGCAAACCTGCCTTACGGTCCAAGGAATATTCGAAGTCAAAGCCTGGCGGACTCCAAGTGATGAGAATTCACCGGAGCATGTTGTGGTCAGTTGTTCGGCCACTGGGAAGCCGGCCCCGGATATCACGTGGAGTTCAACGGTGGAAATGAACGCTGTTCCTGAGGTGGAACGCGTTTCTAAAAAGGACGGAATAGTTACTGTCACCAGCAAACTCACGCTCCGCTTGTCAGAGTTCTCTGGCAGCAGCGTGGACTGTCTCCTGGCAACATATAATATCACCAGAACTATTACTTTGCCTGAAGCTCGGACACCAGAAATTGAAGGAAGAAGTCATTTCTCTTCTACATGGATAATAATTATCCTCGTGATCATTCTCACCATTACCATATCTGTTGCCTACATTGTTTCCAggctgaaaagaaaaaaagGTGACAAGAAAGCAAAACTCTTCCAGGGAGAAAGGAGGCCTGACCTTTTGCTGAACTGTGATGTGTGACTGTTatctttttatttgttctttaaGACGGGTGTGGAGACTTCTCAACCAATTGTAGGGAGCGGCTGGCTCAGCGATGCAATTTTTTTGAAGTCTCTGTTCAAGAAGAGGAGGATATAACTTAGGAGACACAACAGTCCACAGTGGTGCAATAGGGTCAGATCACCATGGAGACATGCCCTGTGCACTGACCACACAGAAGCAAAGGCCCGTGGGATTGCTAAAGGGCACATCGCCCCCCCCAAATGCAACACCTGCAGAAGGCCCTCCTACAatggaaaaaacaatgaaaacatccATTTATCATCATTTAGGCTATTTTATGTGGCAAGCAACATTCCATGTCTCACTGGACCACCAGGGTTACCTCAAGTCTCCGATCATTTCAGTCACATGATGCTCAAATTCTAATAGCAGACATTTGAGACATTACGCCCTGGGGACCCTTTGGATGTACGCAGTTCATAGCTTCAGAGGACCTTATCGGCTCCAGAACGGCATCAGCCCATGGTGATGTGATACCCGTTGTTTACTTTCCCAAGAATTGGTGGAGCAGAAGTCGGTGTCACGGCTTGAGCAAGATAATCTTACTCCCCGTTAAAATGTTTGGGGTGAAAAAGAAATCCAGAGTAATTTTATAACCCACCCAAACATCCCTGTTGACATTGTATCCATGTAGAGGACACACTAAACAGTGCATTTCTTTTCACAAGTTTGCGGGTGTACTTTTGGCGTTTAACAGATCTCAAAAAGATGCAAATGGGATTTGCCACGGAAGGAAGAGATTAGAGATTTTATGATTTTGTCATTAGCTTTCCGTTTATGCTTGTGCGCGAAACATAAGTTtgattgcagttttgttttttggcaAGTACTGTTTTAAAGAAGTGAAAGTAATAACTTGTTTGTGCAATATTTTTGTTAGTTGGTGAAAATGTGTACATGGTCAATGAATATGTCACTTTATTCAGTCTTACATAAGCTATCTATGCTGGCTACTCTATATAGGAtgcaatgtaaaaataaacaagttatatatcatataataatgtataaccTTCACTGCAGCACTTTTAGGGTTCATTTCTGTTACATTTTGGACATGCATTTACCTGTGTGTATTCAGATATACAATGTTTTCAATCAATTTAATAAATGATATAGTCGGTgcaccatttttaaaattgagtTATAATTTATTCTGagt

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07686	V-set	Immunoglobulin V-set domain	Domain	Interproscan
PF08205	C2-set_2	CD80-like C2-set immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013106	Domain	Immunoglobulin V-set domain	Interproscan
IPR013162	Domain	CD80-like, immunoglobulin C2-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR047164	Family	OX-2 membrane glycoprotein-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46841	OX-2 MEMBRANE GLYCOPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009986	Cellular Component	cell surface	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0034113	Biological Process	heterotypic cell-cell adhesion	Interproscan
GO:0043025	Cellular Component	neuronal cell body	Interproscan
GO:0098632	Molecular Function	cell-cell adhesion mediator activity	Interproscan
GO:0150079	Biological Process	negative regulation of neuroinflammatory response	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-