Gene detail

Detailed information of KAJ8395751.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8395751.1	GEO13361P1-RELATED	AAFF_1.1_unplaced_114	2854945	2872060	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00029880

AAATCCAGCAAGCCACCTGCCAACGCGCCAAGCTTCTGAATAATCGCTGGTGATTTGAAAAGCTGAAGTGGAGAGGGATCGCGAAAGGGAGAAGGAAGAGTAACTTAAACTGAAATTGAACAACAAAAGCTTGCTACTTTTTTTCGAAATATCAGGCAACTGGCTTGCTAGTTATCTTGCATGGTCTAACTTAAGCTCATGTTAGCCAATAACCTAGCTAGCCGAGTCACTAGCTAATCGTCGTTTGGTTAATTATCCAGTTAAGTTAACCAGTTAGCTAACCAATGCTTTTGAATCCGTTTATGAACGGAGCCTTTGAGGCTATGTGTGCACCACTTCAAAAAGACACTACTTTTACAAAGATATTCGTTGGTGGATTACCTTACCATACAACCGATGCTTCTCTCCGAATATACTTCGAGACATTCGGGGACATTGATGAAGCGGTGGTGatcgcagacagacagactgggaAATCTAGAGGATACGGATTTGTGACCATGACGGACCGAGCAGCAGCAGAGAGGGCCTGCAAAGATCCCAACCCCTTTATCGACGGCAGGAAAGCCAACGTCAACCTGGCCTTCCTGGGAGCCAAGCCCCGTAGCCTGCAGACAGCCCTGCCCATCGGTATGCAGCAGATCCACCCCGCACTCCTCCAGAGACAGTACGGGCTGGCCCAGCAGTATCTTTATCCTCAGTCCTTTTTGCAGCCCCTGCCGATGCTGCCCTCGCATGTGGCCTCCCTCTGCCTGAACCACAACCGCACCTACGGCCAGTACGCCTCGGCCGCCTTTGACCAGTACCCTTACTCCGCCTCTCCGGGGTTCCTGGGGTACGCCTACACCCCCAGCCCCACCGCGCACACACCAGCTCCCCAGTCCCTCTCTGCTGCCACTGGCATGGCCACCGCCTTCCTGCAGTACCCCCCTCAGCCAGTGCAGCCTGATCGCTTGCATTGAGCCCCATGGGGGTGAAGGAGGGGGGCAGGGTTGCTGGAGGGGTGCGCCGATTGTTGTTGGGAAATTGCACCATGATATCAGGAGAACCCACATTTCAAGTGACAGGGTTGTGTCATTTCAAAGGGCTTCCAGAAGCACACAGCAACGCTGTGTATTGTGtttagtaatattattattactattgttgTCTACgatcgttattattattattgttattatattctTGTTAATAATGTTCTTATTGTTGCTCTTAATGTTCCTATTGTTCTCATGCTCAGAATGTTATGATTATATTGTTTCAATCAGAAACCTACTCTAAATGGAGGGCAGGGGCTCCATGAGATATAAATGCTGTAACAACCTCCTTGTAGCCATTGTACCCAGACCCCTACAGCAGTCATCCATGCTCAGTCGTGAAGATGAGGAATCCGTCCCTCCCTTGTTAGAGCTTTAACCAGTATTCGACCAGACCATGAAAAAGCCAGCACCCAGTGGGTGTATCGCGTGAACATGGTATCAGTATCACTTGCTCTTACAAAGCCTTATGATCTTTGTTTTTGCCCCCTACCCCCCTCATAATGTGAAAAGCCCTTCTCTTTTCTCCTTTTATGCAGGACTCTGATGCCAATGTTGGAAtttcttgttcttttttaaagGGCAGGTTCATGTTGTATTTTACTAGATTATTGCAGCTGGATGTAGATAATCACATCAATTATCAATTCAATATACAATTATAATAGAGAGGGGGGGCTTATTGGGGGGTCAATGTACAAGGTAGATGACACTGTAATACATATCTATTTTATAGAACTGTTAATGATATCAAATGTTGCTTTCTAAAAGGACATTCATGTACaacatttttaatgttgtggtGGCAACTTAAAGGCTATGTTTACCAGTATTTATGTTAAGATATTTAAGATGAAAGTaaaactttttttcattttttccccctcttatTTTAGCTGTTAATTGATCGCTCACAGTTAATGTCACAGGTCTCCAGGGTGTGTTGGTCACTACTGTAGCTTGCTGGCACAGTTGTATTTGGAGCATTTCAGTACTATGTTGAAATAGTGAAGCcataccaaaaaaaataaagaatttgtaaatccaaaa

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050886	Family	RNA-binding_regulatory_proteins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48024	GEO13361P1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0043484	Biological Process	regulation of RNA splicing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-