Gene detail

Detailed information of KAJ8394792.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8394792.1	TRANSKETOLASE	AAFF_1.1_unplaced_122	793579	811078	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00041470

GCTTTGACagcccagcccctcccccttttAGCCTGCGTATGACTATAACGTTACTGTACtttgcgtgcacacacacacacacacacacactgcagtcttgTCGCCTGTGTGCAGCCCTGCCTGCTTTCGGCACTAGATTAGCCGCATCTATTTATCTGCATACTTTCTTacttaccctctctctctttctctctctctctctctctctatccctctctccctgagtGTTGACGCTTGCGCACGCAGGACATCGCATATTaggattttctttttaatcAGAGGGAGATCCCGCCGAACCTGTGGTTCTGTCTTCAGTATTTTCAGTTGTGGTGattttgacagatttttctCCATGGAGGATTATCACAAACCCGATCAGCAAACCTTGCAGGCGCTGAAGAACATCGCCAACCGACTACGCATCAACTCCATCAAGGCAACAACTGCTGCAGGCAGCGGACACCCGACGTCATGCTGCAGCGTGGCAGAGATCATGTCCGTGCTGTTCTTCCACACCATGAAGTACAGGCCAGAGGACCCCAGGAACCCCAACAACGACCGCTTCGTCCTGTCCAAGGGTCACGCTGCTCCGGTGCTGTACGCCGTCTGGGCGGAGACGGGCTACCTGAAGGAGAGTGAGCTGCTGAACCTCCGAAAGATCGACTCCATCCTCGAGGGACACCCCGTTCCCAAGCAGCAGTTTGTGGACGTGGCCACGGGATCTCTGGGACAGGGCCTGGGGGCCGCTTGCGGGATGGCCTACACCGGGAAATACTTCGACAAGGCCAGCTACCGCGTTTACTGCCTCCTCGGAGATGGAGAACTGTCTGAAGGGGCGGTGTGGGAGGCCATGTCCTTCGCCTCGTACTACCAGCTGGACAACCTGGTGGCCATCTTGGACATCAACCGCCTGGGCCAGAGTGACCCCGCCCCCCTGCAGCACCATGTGGAGAAATACCAGAGACGCTGCGAGGCTTTTGGCTGGAATGCCGTCATCGTAGACGGGCACAGTGTGGAGGAGCTGTGCAAGGTGCTGTCCCAGCCCCGACACCAGCCCACCGCCATCATCGCCAGAACCATCAAAGGCAAAGGAATCTCAGTGGCGGAGGACAAGATGGGCTGGCACGGTAAGCCGCTCACCAGGGACATTGCCGACGCGGTGCTGAAGGACCTGCACAGCCGCATCCTGAACAACAACAAGCGCCTGTACCCGGCCACGCCCATGGACGACGCCCCGCCCGTCAGCGTGCGCAACATCAGGATGCCCAGCGCCCCCAGCTACAAGCCTGGAGACAAGATCGCCACGAGGAAGGCGTACGGCCTGGCCCTGGCCAAGCTGGGGCGCTACAACGAGCGCGTGGTGGCCTTGGACGGGGACACCAGGAACTCCACCTACTCAGAGATCTTCAAGAACGAGCACCCCAATCGCTACGTGGAGTGCTACATCGCCGAGCAAAACATGGTCAGCGTTGGCGTGGGCTGCGCCTCTCGGGACAGGAACATCGTGTTCGCCAGCACCTTCGCCACCTTCTTCACCCGCGCGTACGACCAGCTCCGCATGGCCGCCATCTCCGAGAGCAACATCAACCTGTGCGGCTCTCACTGCGGTGTGTCCATCGGTTGTCACGGGGCGGCCAGATTTCCTTTTCGTTCACCAGGAGAGGATGGCCCCTCGCAGATGGGCCTGGAAGACCTGGCCATGTTCAGAGCCATTCCCACGGCGACCGTTTTCTACCCCAGCGACGGCGTGTCCACCGAGAAGGCGGTGGAGCTGGCCGCCAACACAAAGGGTATCTGTTTCATAAGGACCAGTCGCCCAGAGAACGCCATCATTTACAACAGCAACGAGGACTTCCATGTCGGACAGGCAAAGGTGGTGTACAAGAGCAACGATGACCAGGTCACTGTGATTGGAGCAGGGGTCACTCTTCACGAAGCGCTGGCCGCGGCCGAGCAGCTCAAGAAAGAGAGGATCAGCATCAGAGTGATCGACCCCTTCACCATTAAACCGCTGGACTCCAAAACCATCATCGACCACGCCAAGGCAACCAGGGGCCGCATCATCACCGTCGAAGACCACTACTACGAGGGCGGCCTGGGGGAGGCGGTGTGCTCGGCCGTGGTGGGCGAGCCGGGGTTCACGGTGCATCGGCTGGCGATCGCCCACGTCCCACGCAGCGGCAAGCCGGCCGAGCTGCTCAAGATCTTCGGCATCGACAGGGACGCCATCGCGCAGGCGGTCAAGAAGATGATCAGCAACTCCGCCAACGCCAAGTAGAGGAGGGTGTGGCCCCAGATGGCACTtacagcgccacctgctggccctTTCTGTTAATAAAACTAGTCACTAGTCACggatcccccaaaaaaataaaaaaaataattgtacttcTGTTAATTGTCATTGATGTGGATCCAACAACCCTgagtctgcccccccccctcccaaccctgagAACGAGTAACATAGTTGTTTGAGTAAGCAGTGAAGATTTTGAAGTAGCTgtcacttttttcacattttgacacAGTGCCCCCACtttgtacccccccccccccccccacttgaATGACCGTGTACAGGCTTCTGAGCTTTTTGAAGCAGGCTTGGTGGCCAGAAACGGTAACAATGACCAGTGATTTACCTGACCCTTACAACATTTGACACCAATAAAGTAATTTGTTTCTTTACACAAAACACAGGTATATCACTTGTCCCTGTCTcaaactgaaaaatacagtTATTGTCCccgtgttgtgttttttttgttgtgatttGATATTTTCAACCTAAAGGTTCCTCATTTGCCTATTTTTTATCATATCTTAGTCTAGCTGTCTTACGATGtacaggttactgccaaaataaaggaaacacttgagtaaatgaaggattctggcagctctgtcatggtgtggggtgagtgtccctggcatggtttaggttcacccAACCCCTTTGAAGGCAaagtaaacggcaataaatacaaagccattgatcaccttcatcctgtggtgaagcatttctatcttgatggaaTTGGtctccaggatgataatgccccatcCTCAAGACATGActgccatgaccatctcagtcaccagatctcagcccaattgaacactttgaACCCAAttgtgagattctggagcagcacgtttttccactaccatcaaaaaaacaccaaatgatggaatttctctggaaagaatggtgttgcatcactgTGAAGGATCAGCCTTTGCCCATcttttaaaatacacatttttgtctGGGATTTGCctaatttaaatttgtgaaATCTTTTAATCTAGGCTGGTGATTGAGTTGTTGTATATTGTCTAATTGGAGgaccctgtctgtctctgtctcagtgtCAAATTTACAAATCAACCCATAGTTGATCTAAATCTAAAAACCATTTCATTCCAGTGACTGTGATTGTGTTTAATTATGTGTGGGTATGAACTGGTAATAATTGAGCCAATTTGGGCTATTTAAGCACAGGTGTGTAGATGTTGGGGAGTTCAATGCGATTCTTGTGTTGCTGGTTCAGGAGttggtttaaataaatagtttgtaCTTTTTTGTAAAAAGGCTCCTTCTGTTTTTCATGGGCAGGACATCGGGCAGCCTTGTCacaatccctccaatagagttccagaatctaggc

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00456	Transketolase_N	Transketolase, thiamine diphosphate binding domain	Domain	Interproscan
PF02779	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF02780	Transketolase_C	Transketolase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005474	Domain	Transketolase, N-terminal	Interproscan
IPR005475	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR009014	Homologous_superfamily	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	Interproscan
IPR020826	Binding_site	Transketolase binding site	Interproscan
IPR029061	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR033248	Domain	Transketolase, C-terminal domain	Interproscan
IPR049557	Conserved_site	Transketolase conserved site	Interproscan
IPR051424	Family	Transketolase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43195	TRANSKETOLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004802	Molecular Function	transketolase activity	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0009052	Biological Process	pentose-phosphate shunt, non-oxidative branch	Interproscan
GO:0030976	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0070062	Cellular Component	extracellular exosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-