Gene detail

Detailed information of KAJ8394176.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8394176.1	SODIUM/DICARBOXYLATE SYMPORTER-RELATED	AAFF_1.1_unplaced_129	2154031	2171238	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00049810

ATGAGCCTGACTCCCGCACAGATCGTCTACTTCGCCTTCCCCGGGGAAATGTTGCTGAGAATGCTGAAGATGGTCATCCTGCCGCTGGTGGTGTGCAGCTTGATCTCGGGGGCGGCCAGCCTGGACACCCGGTCCTTGGGCAAACTGGGCGGAATCGCGGTGTCGTACTTCTTGGTGACCACTCTCATCGCCTCGGGCATCGCCGTGGCCCTCGCGCTCATTATCAAACCGGGAGTCGGTGCGCGCGCGCTCAACGGCAACGCGCTGGGTTTGGAGACGGTCACCGCCAGCAAGCACACGGCGGACTCGTTTTTAGACCTCGCCAGAAACGTGTTTCCAGCAAACCTTGTCGCTGCGGCCTTTCGTACATACGCCACGGATTACAAGAACCTCACCGTGGGAAAGTTCATCAATGGAAGCCCAGTCTATCAGCTGGTCCCCGTTGGCACGGAAACAGACGGCATGAACATCCTGGGCCTGGTGCTGTTTGCCATTGCGTTCGGCGTGGCCCTGAGGAAGCTGGgcgcggagggggaggggctcatCCACTTCTTCATCGCCTTCAATGAAGCCACCATGGTGCTCGTCTCCTGGATCATGTGGTACGTGCCCTTCGGCATCATGTTCCTGGTGGGCAGTAAGATCGTGGAGATGGAGGACGTGGTGCTGCTGGTCACCAGTTTGGGCAAGTACATCTTGGCCTCCGTCCTGGGGCAAGTCATCCACGGGGGTGTCGTCCTGCCCCTCATCTACTTCGGGTTCACGCGCAAAAACCCCTTCAGCTTCCTGTCCGGCCTCATCACCCCCTTCACCACGGCCTTCGCCACCTGCTCCAGTTCAGCCACTCTGCCCTCTCTGATGAAGTCTGTGGAGGAGAACAACGGCGTGGACAAAAGGATCAGCCGCTTCATCCTGCCCATCGGCGCCACCGTCAACATGGACGGAGCAGCCATCTTCCAGTGCATCGCCGCCGTCTTCATCGCCCAACTCAACAACGTTGAGCTCAACACTGGCCAGATATTCACCATCCTTGTGACCACCACAGCGTCCAGCATCGGGTCGGCGGGGATCCCCGCTGGAGGGATCGTCACCATCGTCATCATACTGGAGGCTGTCGGTCTACCCACCAACGACCTGTCACTCATATTGGCTGTGGACTGGATTGTGGACCGCCCAGCTACGGTGGTGAACGTGGAGAGCGATGCTTTTGGAGCCGGGATCCTTCAGCACATCAACAAGAAGGACCAGAGGCAGCTGCGGccggaggagagcgaggagctGGCGGAGGTCAGGGTGGAGGCCGTGGCTACAGCACGGGCCCAGGATGAGATGTCCCCACTCGTCACACACCCGGGCCCCGGCCAGGCCCACAACGGCTCCCTGGAGGAAAAGGGAGCCATGGAGAGTGTGCTGTAAACCTGGAGAAGGCCCCTTCCCTTCCATTTTTacacttgacattttaagcatttagcagacgctcttataaagagcgacaagatgtgcatttaatacacggtatgatcaatcattgttcgcacaagagatcagtgcagtaatacagcgatagacatcattgttggcagctgcataccgtacctgtaacacagggaaagaaaaggttagtagataaaaaataaataaaaatacaaatgtaaacgTTTTTCagacagttttaaacatggatacacattacgaaatgcagtattaaacatgtaagcagtggtgatgacaattagttaaatgtacagatttcagtggtagtggaatcccCACTACCATCGGAAACACCACCACAGGAAGTGAATCTTCACCCCATCACCGAGACAGCTTTGCCTCCAAGAAAGGCCACTACCATCTCGCCTCGTGACAGCGATGTGCCATAtcaacaatatacagtaccgGAAGTTAACCCTACGATAGGGTTATAATTCAATTTGCCTTACAGTCTGAGAACTTGTCTGGGGAATTTTGctggtttttaatgttttcacttttgttaattattaatttttatatttttattcaattctgCGGAACTGTAgtgtaaaacctttttttatatcTGTCTGCAGTTTTTAGATGGACTCATTTAGTCATTTATGTGACTTTGTAATCTTCAACCTTTTTCTTATTAatgatttggtggccaattgtaccctctgttgGTACAactatcccccttcaacaagcctgccacctgcagctatgggaccagccgctactctgggaccggcggtgGCAGGGATGGCGAAcggcctccttcgagacggcacccgcccgAGCGCCGACCATGATTCTGATACGTGGCCGACCGTGATTTCGACCTTcactccctctggggtggacagccaatcacc

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00375	SDF	Sodium:dicarboxylate symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001991	Family	Sodium:dicarboxylate symporter	Interproscan
IPR018107	Conserved_site	Sodium:dicarboxylate symporter, conserved site	Interproscan
IPR036458	Homologous_superfamily	Sodium:dicarboxylate symporter superfamily	Interproscan
IPR050746	Family	Dicarboxylate/Amino Acid:Cation Symporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11958	SODIUM/DICARBOXYLATE SYMPORTER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0015175	Molecular Function	neutral L-amino acid transmembrane transporter activity	Interproscan
GO:0015180	Molecular Function	L-alanine transmembrane transporter activity	Interproscan
GO:0015183	Molecular Function	L-aspartate transmembrane transporter activity	Interproscan
GO:0015194	Molecular Function	L-serine transmembrane transporter activity	Interproscan
GO:0015195	Molecular Function	L-threonine transmembrane transporter activity	Interproscan
GO:0015293	Molecular Function	symporter activity	Interproscan
GO:0015813	Biological Process	L-glutamate transmembrane transport	Interproscan
GO:0015825	Biological Process	L-serine transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-