Gene detail

Detailed information of KAJ8393171.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8393171.1	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	AAFF_1.1_unplaced_140	2686546	2704285	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00068540

GTCGGGTTGAATTCGCATTCAATTCGACGGGTTTCGTTGGTGGGTGGTGGAATCTGACTTCTTCCATCCATCCGTTACAGTAGGCGGCGGTATGCACCTATCCAGTGGTTTATACCTTATTTTTTACCCATGACGACACTTCCGTCATTACTATGGGGACTTAGTCAAGCCTCGCGGGAGTTGGGGTTACTATGGGACTCAGTGAAACTTCGCGGGAGTTGGGTTACTATGTAGCCATCACCGTGTTTCCTGCTGCAGGGTAATCCACGTGTAGGCCATATCAGCGGTGTGCTGGCTATACCTTTGCTATCGACTCACAGCAAGCAaattcagtttttaaaaaaacatgGCAGCAGAAAAACAGGCAAACCCCAAGAAAAAGGTTCCCCCACTTCCCAAGAAAGTAGAGCGTTcctgtgaggaggaggaggcagtagCGGCCGCACCCAAGGCGACAGCTAAAAAGAAAGCTACTCCAGCCAAAGTAGCGAAGAACGGAAGAGCATTGAAGAAGAGAGGAAGTGAGGATGAAGGTGAGGCCCCTCCCCCAAAGGCCatgcccctccaccccccctcagAGCTCACTCCAGCAGTGGCACACCCTACTGAGGATGATGAGCATGATGATGAAGATGGAGAGGCAGAGATGGATAGCACGCCTTCTCCAGTTGCCAAGGCAAAGAAAGCAGGAATGGTGAAGGACAAGAAAgatgacagagaagaggaggagggcagTAAAGATGGACCTGCACTGACTCCTGGGAAACGGAAGGCTCGGCCCAAGGAGGAAGGTTCCCCAGCCAAGCAAGCCAAGCCTGAGACTACAGGCAGGGTTCAACTTCATGTTTCATTATTAAACCGAACACAAGCAAGAGACTTGTCCAGAAGAAATCAAAGAGGCAAAGAGGCCTTGGCCAATTTCTTCTCTGAAAATAACTTGGAGATCCAAAATGTTCGATTGGGGTCCTCCAAGAAATTTGGGTATGTGGATTTTGCTACGGAAGATCAGCTGCAGACAGCCCTTGAGCTCCATGGGAAGAAGGTTCTGGGACAGAACGTGAGGTTGGACAAGGCCAAGCACAAAGCAACCCCTCAGGAGGCCCAGAAGGAAAGGGATGCACGTACTCTCTTTGTGAAGAACGTCCCGTTCTCTGCCACAAAGGAGGACCTGAAGCAGGTCTTCGCCCAGGCAATCCAAATCCGCGTACCCACCGGCAACACCGGCTCCAACAAAGGCATTGCCTACATGGAGTTTAAGAGCAAGGCCGTCGCGGAGCAGGTGTTGGAAGAGAAGCAGGGAGCAGATGTTCAAGGATCCTCTGTTGTCATGGACTTCATCAGGGACCAGAGCCAGAAGGAGGCCAGAGTTTCAGCTGCAGCCCCTCCCAGTAAGACCCTCATGGTGAATAACCTGGTGTACAGCGCGTCCGAAGAGACCCTCCAGAAAACGTTTGAAAAGGCTGTCAGTATCAGAATACCACTGAGCAACGGCAGGCCGAAGGGATTTGCCTTCGTGGAGTTTGGGGATGCGGAAGACTCGAGAGAGGCGCTGCAGTCTCTGAAcggcgtggaggtggaagggaGGCCCGTCCGGCTGGAGTTCTGCCGCTCCCAATACGAGGAGCCAGAACTGGGCCGACCCACAGGCCCAACAAAGACACTGTTTGTCAAAGGTCTCTCCAAGGACACCACAGACGAGACGTTGAGGGAGTCCTTCGAGGGGGCTATTGCTGCCAGAGTGGCCACAGCCAAGGACACCGGAACATCTAAAGGGTTTGGCTTtgtggactttgacaacgaggaGTTCTGCAAGGCATCCAGAGAGGCAATGGAGGACTGCGAGATCGACGGCAGCAAGGTGGTGCTGGACTTTGCCCGGCCCAAGGGAGAGGGGGCCGGCAGGGCCCGCCGTGGGACATTCAGCAGGGGAGTGGGATccaggggaggaagaggagggagacgAGGAAACCGAGGGGGATTTGGAGGTAGGGGTGGTGGCTTTAGAGGGAAACCACGCGGAAAGAAGATGAAGCTAGATGAATAGATTTCTTACAGATTGAATCTGTGGGCAGAGAGGCCCCCACACCTGAAACTGAACGGACCACGCCTCCTTTTGGGCCCCCCATTCTCACGAGTAAAATTGTTCTCACGAGTCCGCCAGCCACTCTGTTAACGTGGATGTTTTGCTGTGTTgtaacatttcattttgttgGCTGTTACTGAgagatttttttacatattttgcctgtttgtaaagaatgtgtgttttttggctGAACTCAAATGGTCTTTTGGGTTTCTAGAATCCAGCAGTTTCTGCGCTATTGTTTTTGAAATGCAAACTTAAATCTAAAAGCACAGGATTGGGTAGACTGGGGTCTATACAAGAGTAGTTGACATACAACACGGCATTTGttagaatatacatttgaaTGTGTTCAAGGATCTggactttttaaatatataaatgtttgaaaaataattttaaagtaaatttaaaaaaaaaatttttttgtgaTCAAATGCTTACAATTTTATGCACACCACATTCTCTTGAATTGTGGCCAATTTCAGGAAATACTGATGGTATAATTTGTCCTGGAATATATCTGTGAAGTCGACGATCTCTGGGCCGTAATACACACTGCATTGTGGTGTGTATGTATCAGGTAGCCAGTATGATGGAAAACCTTTTGAAGTTGAGCCATACCACCTTCTGCCCTTCTCATGAATAactgctgaagctgagcaggTGTGGggttggttagtacttggatggggacaCCTGGAAAAATGAAATCGCTGCTGGAACGGGTGCTGTTCGCTCATAATAAAAAGGTAATTGGGTCAAGTTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034235	Domain	Nucleolin, RNA recognition motif 4	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR051106	Family	RNA-binding and splicing regulatory protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48028	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-