Gene detail

Detailed information of KAJ8389241.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8389241.1	HOMEOBOX PROTEIN GBX	AAFF_1.1_unplaced_185	1393271	1444695	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00122610

ATGCAGGCATACGTATTAAAACCAAAATCATTTTCGTATATAATAGTCTGGAAAGCTATACAAGAGCTTCCTAAAATGACTAATGACGTGGCGAAAAAGCGAGGAAAAGCACCCGGCGAGAGAAAGTCGACGAAAAGAAAAGCTAAGAGAAGGGAGACTTATGCCGTGTACATCTACAAAGTCCTGAAGCAGGTTCACCCAGACACCGGTATTTCGAGCAGAGCTATGAGCATAATGAACTCCTTCGTCAACGACGTCTTCGAGCGGATTGCGACGGAAGCCTCTCGGCTGACCCAGTACAACAAGCGGTCCACCATCACCAGCCGTGAGGTCCAGACCGCCGTGCGCCTGCTACTGCCCGGAGAGCTGGCCAAGCACGCCGTTTCAGAGGGAACCAAGGCGGTTACCAAaTCCTGGACTCTCCAGCGGAGGTGGCGGATAAGGCAGACCGGATCATCACCATGCTGCCGTTCCAGCCCCAACATCATTGAGGCTAACACCAGCGCCACTGGCATCCTCAAAGCAGGCGTGAGAGCTTTAATTGTGTGCCGTCCCGACGCTGGCCCGTGGGGCCCAGGAACAGCGGTGGCTCTGCTCTCGGCCCGATGTCCGTTAATGTGGGAGCAGCGCCAGGGCCCACTGATGATGTCTGGAGAGactgagaagaagagagaGCGGGTGGATGTGACAGGACTGGAGTCCCAGCTTGGCTGCCCTTTGACCCCCTGCACGTGCTCAGTCTGGCACTACGctctgaggaAGAAAGACTGCAGTCTGATCGCCATGTCCCGAGGCACTTTCGCCTTCACGCCCACGGCCCTGCGCTCCCTGCGGCTGGACGAAGACCTGCTGGAGAGGCAGAGGTACACCAGGAGGCTCGCCGCGCCCCAGCTCagcagctacctgctgaagaaGGAGGCACGGGAGAGGCGGGGCCCCAGGCCGCCGCTCTCCGGAGCCACGTCCCCCCCGCAGATGTGCTGGGACCTGGTGGTGCACAACGCCCTCTTCACGGGGGACCTGGAGGCGGTGAGGCGCCTCTTCCCCAAGGGCTCCTCCGCCAACCTCGTCGTGGAGTCCAGGGGTGGAGACATGCGATGGGTCAGCAAGACCGTGGGAGGCAGGAAGGCCATGGACTCGAAGATTAAGTGGCGTAAACAGAAGCAGATCCGGAATGATGTGATCGCCACAGCAAAGGCCACGGGCGACGCCCTCCAGTTTTGGAAAGCCCTCATGGTGGGTGATCACCTCACACTCATCGCTATCATGGACGATACGGACGGCGAGCACATGATTAACGCCATCTATGACACAAGCAACATCGAGGAGTGGAAGAACCACCGCTTCAACTACAAATGTCTGAGACTGTGGTCCCTGACCTACGAGCAGGAGCTGACCACACCCCTGCACATCACGGCCGGGCGGGGCTTCACCGAGTGCCTGAGACACCTGTTGCAGAGGGGCGCGGACGTGGAGCTATCCCCCGGGGGCGCCAGCGCCCTCCACGAGGCCTGCGAGCACGGCCACAGCGAGTGCGCCAGGCTGCTGCTCTCCTACGGGGCAAGCGCCAACGCCGTGAGCGAGGACGGCGTGATGCCCCTGCACGTCTGCACCACCCCTGAGTCCCTCGCGTGCGCAAAGTACCTCCTGCAGTTTGGAGCCACCGTCAACGGGCAGAGCCTGGAGGAGGAGAACACCCCCTTGCACATGGCGGCCTGGTGCGGCCTCCCGGGCCACGTGGACCTGTACCTGCGCTACGGAGCGGCCCTGGAGAAGCGCAACCACGAGGGCAACACCCCTCTCAACGTGGCCTGCTCCCAGCCACAGGCCACCGAGGACCTGGGCTGCTACCGGGAGGTGTGCCAGCTGCTGCTGGCAGCCGGGGCCAACGTGCACGCGGGCGACCAGGACAACCAGACAGCGCTGCACATGGCCTGCAAGAGCGTGATCCCCGACGTGgtggagctgctgctgcagcaCGGCGCCGCCGTCAACAGCATGTGCTACAGCGGCGACGCGCCCATGCACAACGTGCTCAAGGTGGTGGCCTACAAGACGCCGCAGCAGCCAGAGCGCGTTGTCCGCTCGCTGCTCAACTACGGCTCCATACGCGTCTGGCCCGGGGCCCTGCCCAAGGTGCTGAAATACTGCTGCGTCTCTCCTCGCACGATCGAGGTCCTGCTGAACTCGTACGACCGCCTCAAAGTCACAGACAGCTGGACAGAGGCTGTTCCGCCCGAGATCTTCCAGAAACACCGGGACTTCTACGAGTCCCTGTTCTCCCTGGCGCAGGGTCCACGCTCTCTCCAGCACCTGGCCCGCTACAAGATCAGGGTGGTCCTGGGAGAGCGGGTGCACAGCGTGGTCCCCAAACTGGGGCTGCCCACCTTCCTGCAGAACTACCTGCTGCTGGACTTCAGGGATTATAGACCAAGCGGCCAAGGGACGGCGTTTTCCATCGACTCCTTGATTGGGACTCCGCAGCCCCGACCCGGGCACCTGCTCTACACGGGCTACCCCATGTTCATGCCGTACAGACCCCTCGTCATCCCGCAAGCCCTGTCTCATTCGCCGCTGCAATCTGGCATTCCTCCGTTAGCACCCTTGGCTTCGTTTGCCGGACGTCTTACGAACACATTTTGCGCCAGCCTGGGACAGGGAATGCCCTCGATGGTGGCCCTCACCACCACTTTGCCGAGTTTCTCGGATGCGCCGGATAGTTTCTACCCACCGCAGGAGATCCCGGGAGCCAGACTAAGCGCCGATCCGGGGATTAGGAGGCAAGAGAGCCCGCACTCCGAGGATTTGCCTGTAAGGGACAAGGGCTCGGAACTGCTCAACTTCTCTGAAACTTTTCAAACTATCACCGGAGAGACCAAACTGTACAGCTCGGACGAGGAGAAACTGGACCTCAAGTCGGCGGAGACGGCCTGCAGCGACCGAGAAGAGGACAGCTCCGTGGACAGCGAGAACGAGAGCTTTTCGGACGGGAACAACTGTGGGTCGTTGTcccaaaagaaactaaaacccGGGTCTCAAGAGCCGCTACCACCTGGGAGCGCAGCGGGCAAGAGCCGGAGGAGGCGGACTGCCTTCACCAGCGAACAGCTCCTTGAACTTGAGAAAGAGTTCCACTGTAAAAAGTACCTGTCTCTGACGGAGCGATCTCAGATAGCACACGCACTTAAACTGAGCGAGGTGCAGGTCAAGATTTGGTTCCAGAACCGCAGGGCCAAATGGAAACGGATTAAGGCCGGGAACGTCAACAACAGATCGGGAGAGCCTGTAAGGAATCCCAAAATTGTGGTCCCCATCCCGGTGCACGTCAACAGGAGGCCGCGCTGTCTCAAGggggctggaacacAGGAGCTGAATACCTGGTGA

Transcript

AAFF_T00122610

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|SOCS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00125	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan
PF07525	SOCS_box	SOCS box	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000558	Family	Histone H2B	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR001496	Domain	SOCS box domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR007125	Domain	Histone H2A/H2B/H3	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR036036	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR042982	Family	Homeobox protein GBX-1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24334	HOMEOBOX PROTEIN GBX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000786	Cellular Component	nucleosome	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030527	Molecular Function	structural constituent of chromatin	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan
GO:0051960	Biological Process	regulation of nervous system development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-