Gene detail

Detailed information of KAJ8387664.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8387664.1	ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED	AAFF_1.1_unplaced_208	1382934	1394051	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00152140

GTCTGACTGAGAGGAGACGGTCGGTTGCTGTCCTTGTACAGTTAGTTGATACTGTGCACAACATACGTGTGCTACGTTTGACTTGAAACTCAATCAGATTTCGACATGAAGTCTGGAGAAGAGGCTGAATCTTTTGTAGAGTTGAACGATTTACCCAACGACTCTCACTTTTTAAAACCGTACATATTAAAACTTAGGCAAAAATCAGAACAAGAAGACCTACTTCGCGACCACCTGGATCTATCGGACCAATTTTTAATCAGGTTTCTCAGAGCCAGAGATTTTGATGTTGACTTGTCGCTTAAGCTACTGATTAACTACCACCGCTGGAGGAAAGACTGTCCGGAAATCAGTGCTAATCTGCACTTGTCCTCCGTCCTTGGCCTCCTCCAAAACAACTATCACGGAATGTTGCGGTCCCGGGATGCCAGTGGCAGCAGAGTACTGATATACAGGATTGGTCAGTGGAATCCCAAGGACTTCACGGGCTACGAGGTTTTCCGCGTGAGCCTCATAACCTCAGAGCTGATCGTCCAGGAAACGGAGACCCAGAGAAACGGACTCAAGGCCATCTTTGACCTCCAAGGGTGGTGTTTCGCTCACGCCCTGCAAATTAACCCCTCACTGGCTAAAAGGATTTCAGCAGTGCTCACGGACTCCTTCCCACTGAAGGTTCGCGGTATCCACCTGCTTAACGAACCCTTGCTCTTCCATCCAGTCTTCACCATGATCCGACCATTCCTGCCAGACAAAATCAAGCAACGGGTCCACATGCATGGGAGCTCCTTTCCCCAAAGCCTGTGCCAGCACTTCCCCCGCAGTATCCTACCCCCAGAGTACGGTGGCACAGGGCCAGGCCTGGAGGAGGTGTGCCAGGACTGGACCCAATTCATCGTGCAGTCAGAGGAAGGCCTGCAACAGCTCTTCTCAGAAACCTGAGGAGATACTGGTCAGAGCAGCTTGAGTGCACACAACCCCCCTGACCTCCCCAACCTGACCCCACACTGGCCTCTTCTGTTCcctttgtgacatcatcacctgGTAATGCTGTTAACACGTGCAGTGATGAGGGCTGACCAttgagcatggtacttaacctgaattgtttttgtttacatcCAGCTGTGTGTGTTGATGTATGTATCAGTAGCAATTTGTcggcttgaaataaaggaggctgaaacccatacctttaaaccaatggttactctcaacctgttaccatttacattccttgattatcaatcaagctaTTAATTATCTTACCAATAGGCATAGCTTCCCAATTTTTTTTCAATAGCTTTGCATTTGcatcacaaaattgtgtagCATTTCCTTTTTCTTCAGATTATCGAACTTTGGATAAATGTACTCTTCTCCTTGCCTGAATTTAATATTGATTTAACAGATTAACTTAAATATCAATATAATATTGTCTGTACAGATTaacataaatatccattaaTCACAGACACCAAAGTTTTCACCTATCTGAGGTTTGTTTGCTaggctttatttatttctcaaagCTGGTGCATTATACAGTTAACGGAAGGAATTAAGTTTAAAGTATAGCCTATTCTTTTACATGTTTCAGTAGATTTTTACTAAATTAAAccccttattgtcatttacacTCTCTAACACCAACGCAGTCAACTCTCGGTCCTACAGGCTGCAGTAGCTGCAAGTATTTGCTCTAAACAATCAACTGATCAACTTAAACCAAGGGGGTACACTAATCAGTGGCATCAGGTGTAGTCAgtgctcagctggaacaaatacctgcagccactgcggcCCTCAGGTCTGAGAGTTGAGTACCTATGCTCTAGCGTGGCGGGAAGAAAGAGAACGCTACAACGtcagacacaattaagaggaagctttgtgattactcgccaatggattattcaacTAATTGGCATGCTTATTAAtctagcaaaataaatgaaaacaggttgagaccacTGTCAATAAGGTATGGGTGTCTGCTAAACAAATAAACGtaatatgatatatttaaaGAGACAGGGACCAGTGTTAGGGCAGATTTTTCATATGAACAGTATGGACAGTATTAATACAaggaatgtgtgtctgtttatgaTGTCATAATTGTCCAATATGTCAATACACTTTCTCATTGTTTGCCTAGATGGAagtgttttatatatatgtaatagCTACATATCTTTGAATAGTATGTCCCCTCTTTTGAAAGTATatgaaattgtaaaaatgtagtcCCAAAAACATTCTGAATTGCATTTATTCTTAGTCTGAATGACTTCACATAGTTAATACTGTTTAAGCTTTATGGTGAAATAATCTGTAATCTGTATGCTTTATGTATTTGTACtgatattgtttattgttttttaaataaacacaagcAGAAGGACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00650	CRAL_TRIO	CRAL/TRIO domain	Domain	Interproscan
PF03765	CRAL_TRIO_N	CRAL/TRIO, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001251	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR011074	Domain	CRAL/TRIO, N-terminal domain	Interproscan
IPR036273	Homologous_superfamily	CRAL/TRIO, N-terminal domain superfamily	Interproscan
IPR036865	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10174	ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005770	Cellular Component	late endosome	Interproscan
GO:0008431	Molecular Function	vitamin E binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0042360	Biological Process	vitamin E metabolic process	Interproscan
GO:0051180	Biological Process	vitamin transport	Interproscan
GO:0120013	Molecular Function	lipid transfer activity	Interproscan
GO:1902936	Molecular Function	phosphatidylinositol bisphosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-