Gene detail

Detailed information of KAJ8387580.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8387580.1	ACONITATE HYDRATASE B	AAFF_1.1_unplaced_209	1049419	1095123	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00152760

ATGGCGTCCTACTGTTTGACTGTCAACCGGCTCCAGCTCATTTTAGGACATGGAGCACGGCGGCTGCATGTGTCAGCAGCACTCAATGCCAAGGCTCAGGTGGCTATGAGCCGCTTCGAACCCGGCTCCAGTataaactatgaacagatgcGTGCAAACATCAGCGTCGTCCGCAAGAGACTGAATCGACCCCTCACCTTGTCAGAGAAGATTGTGTATGGCCATCTTGATGACCCCGAGGGGCAGGAGATTGCAAGGGGGCGCACGTACCTGCGGCTGCGTCCGGACCGTGTGGCCATGCAGGATGCCACGGCGCAGATGGCCATGCTGCAGTTCATCAGCAGCGGTCTGCCCAGGGTGGCCGTGCCCTCCACCATCCACTGCGACCACCTGATCGAGGCCCAGACCGGCGGTGTCCAGGACCTGCAGCGAGCTAAAGAAGTAAACGTGGAGGTGTACAACTTCCTGGCGAGTGCTGGAGCCAAGTATGGAGTCGGCTTCTGGAAACCAGGCTCTGGAATCATCCATCAGATTATTCTGGAAAACTATGCATACCCCGGAGTCATGCTGATTGGCACAGATTCCCACACGCCCAATGGCGGAGGACTGGGCTCCATCTGCATCGGAGTGGGCGGGGCCGACGCCGTCGACGTTATGGCTGGCATCCCCTGGGAGCTGAAGTGCCCCAACGTGATCGGGGTGAAGCTGACGGGCTCCCTGTCGGGCTGGACCTCCCCGAAGGACGTGATCCTGAAGGTGGCTGGGATCCTGACTGTGAAGGGAGGCACGGGGGCCATTGTGGAGTACCACGGGCCTGGGGTGGACTCCATCTCCTGCACTGgAATGGCCACCATCTGTAACATGGGTGCTGAAATTGGGGCCACCACCTCCGTGTTCCCCTACAACCACCGCATGAGGACCTACCTGGAGAAGACTGGCCGCGGGGACATTGCTTCCCTGGCGGATGAATACCAAGACGACCTGGTTCCTGACCCAGGCTGCCATTACGACCAGGTCATCGAGATCAATCTGAGCGAGCTGAAGCCCCACATTAACGGGCCCTTCACGCCCGACTTGGCTCACCCCGTGTCAGAGATTGGGGCGGTGGCTGAGAAAAGCGGGTGGCCCCTTGAGGTCAAAGTTGGTCTGATTGGCAGCTGCACCAACTCCAGCTACGAGGACATGGGCCGCGCCGCCTCCTTGGCCAAGCAGGCCCTGGACCGAGGCCTCAAATGCAAGGCCCAGTTCACCATCACGCCCGGCTCCGAGCAGATCCGCGCCACTATCGAGAGAGACGGCTATGCTAAGATCCTGAGCGATGTGGGCGGTGTGGTTTTGGCCAATGCCTGTGGACCCTGCATTGGACAGTGGGACAGGCGTGACGTGAAGAAAGGAGAGAAGAACACCATCGTTACGTCCTTCAACAGAAACTTCACTGCTAGGAACGATGCTAACCCCGCAACCCATGCCTTCGTCACCATTGTCACTGCCCTGGCCATAGCTGGCACCCTTAAGTTCAACCCGGAGAAGGACTTCCTGACCGCGCCCAACGGGGAGAAGTTCAAGCTGGAGCCGCCCACGGGCGATGAGCTGCCCGCCCGAGACTTCGATCCAGGGCAGGACACCTACCAGCACCCGCCCAATGACGGCAGCACCATGCCCGTGGACGTCAGCCCCCAGAGCAACCGCCTGCAGCTTCTGGAGCCCTTCGATAAGTGGAACGGAAAGGACCTGGAGGACCTGCAAGTGCTCATCAAGGTGAAAGGCAAGTGTACCACCGACCATATCAGCGCCGCCGGCCCCTGGCTGAAGTTCCGCGGCCACCTGGACAACATCTCCAACAACCTGCTGATTGGAGCAGTCAACATCGAGAACGATGCAGTCAACAAGATCTGCAACCAGCTGACTGGCGAGTACGGGGGCGTCCCCGACGTGGCCCGTTACTACAAGAAGAATGGCATGCAATGGGTCGTGGTGGGGGATGAGAACTACGGCGAGGGTTCGAGCAGAGAGCATGCTGCCCTGGAGCCCAGACACCTGGGGGGCAGAGTCATCATTGTCAAGAGCTTTGCCAGGATCCACGAAACCAACCTGAAGAAACAGGGCATGCTGCCCTTGACGTTTGCCGATACCCATGACTATGAAAAGATTCGTCCTGATGACAAGGTCACCATCAAAGGCCTCAAGAAGTTTGCCCCCGGCAAGgcCCTGACGGCCGTGGTCAAGCACAAGGACGGAAGCCAGGACACCTTCCAGCTCAACCACACCTTCAACGAGACGCAGATCGAGTGGATGTTTGTTGTGGTGGAGATGGTGGACACGGTTAGGATTCCTCCCTGGCAGTTTCAACGGCAGCTCAATGAGGCCATAGCAGAGGAGCTCAACAAGAAGTTGGCAAACAAGGTAGTCTATAATGTAGGTCTGTGCATCTGTCTATATGACATCACCAAACTGGAGGACTCCTATATATTTCCAGGTGATGGGGCTTCACACACTAAAGTGCACTTCCGATACGTGGTGTTCCACCCTTTCCTGGATGAGATCCTAGTGGCGAAGATAAAGTACTGCAGCCAGGAGGGGGTGCATGTCAGTTTGGGATTCTTTGACGACATTGTCATTCCGCCAGAGTCTCTACAGCAGCCAGCCAAATTTGATGAGGCAGAGCAGGTGTGGGTTTGGGAGTATGAGACGGATGAGGGGGCCCATGACCTCTACATGGATCAGGGTGAGGAGATCCGCTTCCGGGTCACGGAAGAACTCTTCCTGGACACCTCCCCAACCGGCCCTGCTGGACCAAACCGGGCCCTATATGGATATGCTCAGCCCCAGCTATACTCACCTCGTAGTGCCTCGCTCTCACTCTCCTTCCCCTTCCTGAGGGAGGGCAGCCGCGTGTGGGAGCGAAGACTCCCCCAGCCGGGAGAACTGCCCAGCCCCCTGCCCACCAAGCGCACCCGCACATACTCTGCCACCGCAAGGGCGATATCGGGCCCAGTCTTCAAGGGCGTCTGCAAAAACTTCTCCAGGTCACAGGGTCACGGCTTCATCCGGCCCTCCCATGGTGGGGAGGACATCTTTGTCCACATCTCTGATATTGAGGGGGAGTATGTGCCCATGGAGGGGGATGAGATGACGTACAAGGTTTGCCTCGTCCCACCCAAGAACCTGAAAATCCAGGCTGTGGAGGTGATCATCACTCATCTCAATCCAGGGACGAAGCATGAGACCTGcgaatgtcttgtcgacttcactcccccctccctggggcggacagccaattgccggccccgatggcactcacggccagagccgactctggcgcggctgagGAAACAAACCCTGgacgccgtggccagcatcggacggggacacggttcgaaagccagaccagccctggccattagccccgatcggggcagcatttggctgtccacctcaggaggagggggaaggacggaaattcttccacggacgcctttaaccttctcctcgacggtctcatgccggctcaccctcccccctcccccggaggcggacagccaaatgccgcctccgatcgggcctGACGACCAGgctcggtctggtagagacgcggCAAACTCCTCCTGCAAGGCTGCCACAAACTTCTCTCGGatcttctctctctgtgcggAGGGGAGACGATGGGGGAAAGGGGACGAGAGAGGtatcgtctcctccgagatggcactcgccaagccgacgaccgtaactccggcaccccagatcCACTCCTGTGCGCATGACGAACGActtgtcggcttccttcccccctccctggggcggacagaatCAATTTCCGCCAACGGGCAAGACCAAAGGTGTAAAACCTCACCTTTTCTTGGGCAATTTGATGAGCCCCATGTACCTGAGGCAGAAGTTGATAAGGTCCTGCAGCAGCTCCTCCCCCAACTGGTTCTGAATTGCCTGGAGATGGACCCCCCCACCACTCCAATCTTCACCTTCCTGCGCAGGGACTGGAAAAAGGTGTCCAGTTGCGGGTCGATCTTCTGCAGACACACAAAGGCCACTCTGACCCTTACAGGCAAACCCAACAGACAAGCCAGTATGTTCACATTGGTGGCTGGATCCGATGCAGGTTTTGCTCCATATGCAGATGAGCTCAGTGGcaaatccatccatccatccattatctaa

Transcript

AAFF_T00152760

ACACACATCTTTGTCAGTGAACAAAATGGCGTCCTACTGTTTGACTGTCAACCGGCTCCAGCTCATTTTAGGACATGGAGCACGGCGGCTGCATGTGTCAGCAGCACTCAATGCCAAGGCTCAGGTGGCTATGAGCCGCTTCGAACCCGGCTCCAGTataaactatgaacagatgcGTGCAAACATCAGCGTCGTCCGCAAGAGACTGAATCGACCCCTCACCTTGTCAGAGAAGATTGTGTATGGCCATCTTGATGACCCCGAGGGGCAGGAGATTGCAAGGGGGCGCACGTACCTGCGGCTGCGTCCGGACCGTGTGGCCATGCAGGATGCCACGGCGCAGATGGCCATGCTGCAGTTCATCAGCAGCGGTCTGCCCAGGGTGGCCGTGCCCTCCACCATCCACTGCGACCACCTGATCGAGGCCCAGACCGGCGGTGTCCAGGACCTGCAGCGAGCTAAAGAAGTAAACGTGGAGGTGTACAACTTCCTGGCGAGTGCTGGAGCCAAGTATGGAGTCGGCTTCTGGAAACCAGGCTCTGGAATCATCCATCAGATTATTCTGGAAAACTATGCATACCCCGGAGTCATGCTGATTGGCACAGATTCCCACACGCCCAATGGCGGAGGACTGGGCTCCATCTGCATCGGAGTGGGCGGGGCCGACGCCGTCGACGTTATGGCTGGCATCCCCTGGGAGCTGAAGTGCCCCAACGTGATCGGGGTGAAGCTGACGGGCTCCCTGTCGGGCTGGACCTCCCCGAAGGACGTGATCCTGAAGGTGGCTGGGATCCTGACTGTGAAGGGAGGCACGGGGGCCATTGTGGAGTACCACGGGCCTGGGGTGGACTCCATCTCCTGCACTGgAATGGCCACCATCTGTAACATGGGTGCTGAAATTGGGGCCACCACCTCCGTGTTCCCCTACAACCACCGCATGAGGACCTACCTGGAGAAGACTGGCCGCGGGGACATTGCTTCCCTGGCGGATGAATACCAAGACGACCTGGTTCCTGACCCAGGCTGCCATTACGACCAGGTCATCGAGATCAATCTGAGCGAGCTGAAGCCCCACATTAACGGGCCCTTCACGCCCGACTTGGCTCACCCCGTGTCAGAGATTGGGGCGGTGGCTGAGAAAAGCGGGTGGCCCCTTGAGGTCAAAGTTGGTCTGATTGGCAGCTGCACCAACTCCAGCTACGAGGACATGGGCCGCGCCGCCTCCTTGGCCAAGCAGGCCCTGGACCGAGGCCTCAAATGCAAGGCCCAGTTCACCATCACGCCCGGCTCCGAGCAGATCCGCGCCACTATCGAGAGAGACGGCTATGCTAAGATCCTGAGCGATGTGGGCGGTGTGGTTTTGGCCAATGCCTGTGGACCCTGCATTGGACAGTGGGACAGGCGTGACGTGAAGAAAGGAGAGAAGAACACCATCGTTACGTCCTTCAACAGAAACTTCACTGCTAGGAACGATGCTAACCCCGCAACCCATGCCTTCGTCACCATTGTCACTGCCCTGGCCATAGCTGGCACCCTTAAGTTCAACCCGGAGAAGGACTTCCTGACCGCGCCCAACGGGGAGAAGTTCAAGCTGGAGCCGCCCACGGGCGATGAGCTGCCCGCCCGAGACTTCGATCCAGGGCAGGACACCTACCAGCACCCGCCCAATGACGGCAGCACCATGCCCGTGGACGTCAGCCCCCAGAGCAACCGCCTGCAGCTTCTGGAGCCCTTCGATAAGTGGAACGGAAAGGACCTGGAGGACCTGCAAGTGCTCATCAAGGTGAAAGGCAAGTGTACCACCGACCATATCAGCGCCGCCGGCCCCTGGCTGAAGTTCCGCGGCCACCTGGACAACATCTCCAACAACCTGCTGATTGGAGCAGTCAACATCGAGAACGATGCAGTCAACAAGATCTGCAACCAGCTGACTGGCGAGTACGGGGGCGTCCCCGACGTGGCCCGTTACTACAAGAAGAATGGCATGCAATGGGTCGTGGTGGGGGATGAGAACTACGGCGAGGGTTCGAGCAGAGAGCATGCTGCCCTGGAGCCCAGACACCTGGGGGGCAGAGTCATCATTGTCAAGAGCTTTGCCAGGATCCACGAAACCAACCTGAAGAAACAGGGCATGCTGCCCTTGACGTTTGCCGATACCCATGACTATGAAAAGATTCGTCCTGATGACAAGGTCACCATCAAAGGCCTCAAGAAGTTTGCCCCCGGCAAGgcCCTGACGGCCGTGGTCAAGCACAAGGACGGAAGCCAGGACACCTTCCAGCTCAACCACACCTTCAACGAGACGCAGATCGAGTGGATGTTTGTTGTGGTGGAGATGGTGGACACGGTTAGGATTCCTCCCTGGCAGTTTCAACGGCAGCTCAATGAGGCCATAGCAGAGGAGCTCAACAAGAAGTTGGCAAACAAGGTAGTCTATAATGTAGGTCTGTGCATCTGTCTATATGACATCACCAAACTGGAGGACTCCTATATATTTCCAGGTGATGGGGCTTCACACACTAAAGTGCACTTCCGATACGTGGTGTTCCACCCTTTCCTGGATGAGATCCTAGTGGCGAAGATAAAGTACTGCAGCCAGGAGGGGGTGCATGTCAGTTTGGGATTCTTTGACGACATTGTCATTCCGCCAGAGTCTCTACAGCAGCCAGCCAAATTTGATGAGGCAGAGCAGGTGTGGGTTTGGGAGTATGAGACGGATGAGGGGGCCCATGACCTCTACATGGATCAGGGTGAGGAGATCCGCTTCCGGGTCACGGAAGAACTCTTCCTGGACACCTCCCCAACCGGCCCTGCTGGACCAAACCGGGCCCTATATGGATATGCTCAGCCCCAGCTATACTCACCTCGTAGTGCCTCGCTCTCACTCTCCTTCCCCTTCCTGAGGGAGGGCAGCCGCGTGTGGGAGCGAAGACTCCCCCAGCCGGGAGAACTGCCCAGCCCCCTGCCCACCAAGCGCACCCGCACATACTCTGCCACCGCAAGGGCGATATCGGGCCCAGTCTTCAAGGGCGTCTGCAAAAACTTCTCCAGGTCACAGGGTCACGGCTTCATCCGGCCCTCCCATGGTGGGGAGGACATCTTTGTCCACATCTCTGATATTGAGGGGGAGTATGTGCCCATGGAGGGGGATGAGATGACGTACAAGGTTTGCCTCGTCCCACCCAAGAACCTGAAAATCCAGGCTGTGGAGGTGATCATCACTCATCTCAATCCAGGGACGAAGCATGAGACCTGcgaatgtcttgtcgacttcactcccccctccctggggcggacagccaattgccggccccgatggcactcacggccagagccgactctggcgcggctgagGAAACAAACCCTGgacgccgtggccagcatcggacggggacacggttcgaaagccagaccagccctggccattagccccgatcggggcagcatttggctgtccacctcaggaggagggggaaggacggaaattcttccacggacgcctttaaccttctcctcgacggtctcatgccggctcaccctcccccctcccccggaggcggacagccaaatgccgcctccgatcgggcctGACGACCAGgctcggtctggtagagacgcggCAAACTCCTCCTGCAAGGCTGCCACAAACTTCTCTCGGatcttctctctctgtgcggAGGGGAGACGATGGGGGAAAGGGGACGAGAGAGGtatcgtctcctccgagatggcactcgccaagccgacgaccgtaactccggcaccccagatcCACTCCTGTGCGCATGACGAACGActtgtcggcttccttcccccctccctggggcggacagaatCAATTTCCGCCAACGGGCAAGACCAAAGGTGTAAAACCTCACCTTTTCTTGGGCAATTTGATGAGCCCCATGTACCTGAGGCAGAAGTTGATAAGGTCCTGCAGCAGCTCCTCCCCCAACTGGTTCTGAATTGCCTGGAGATGGACCCCCCCACCACTCCAATCTTCACCTTCCTGCGCAGGGACTGGAAAAAGGTGTCCAGTTGCGGGTCGATCTTCTGCAGACACACAAAGGCCACTCTGACCCTTACAGGCAAACCCAACAGACAAGCCAGTATGTTCACATTGGTGGCTGGATCCGATGCAGGTTTTGCTCCATATGCAGATGAGCTCAGTGGcaaatccatccatccatccattatctaa

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan
PF00330	Aconitase	Aconitase family (aconitate hydratase)	Family	Interproscan
PF00694	Aconitase_C	Aconitase C-terminal domain	Domain	Interproscan
PF03876	SHS2_Rpb7-N	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397	Domain	Interproscan
PF08292	RNA_pol_Rbc25	RNA polymerase III subunit Rpc25	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000573	Domain	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain	Interproscan
IPR001030	Domain	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR004519	Family	DNA-directed RNA polymerase, subunit E/RPC8	Interproscan
IPR005576	Domain	RNA polymerase Rpb7-like , N-terminal	Interproscan
IPR006248	Family	Aconitase, mitochondrial-like	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR013238	Domain	RNA polymerase III, subunit Rpc25	Interproscan
IPR015928	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase, swivel	Interproscan
IPR015931	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	Interproscan
IPR015932	Homologous_superfamily	Aconitase, domain 2	Interproscan
IPR018136	Binding_site	Aconitase family, 4Fe-4S cluster binding site	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR036008	Homologous_superfamily	Aconitase, iron-sulfur domain	Interproscan
IPR036898	Homologous_superfamily	RNA polymerase Rpb7-like, N-terminal domain superfamily	Interproscan
IPR050926	Family	Aconitase/IPM Isomerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43160	ACONITATE HYDRATASE B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0003994	Molecular Function	aconitate hydratase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-