Gene detail

Detailed information of KAJ8385336.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8385336.1	NGD5/OSM-6/IFT52	AAFF_1.1_unplaced_253	1217987	1240320	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00190520

ATGGAACGCATGTTCTGCTTACCTTGTACACTAAAACTCCCGTGGCCCTTTCAAGAGCTTATAAAGAAAACGAAAGGAACCGTGGACAAGTTGTTATCGAAGTCGAAGGAAACGCTATGCAAGTGCACTGAAGCAGTTTCTCTCATGGACATGGAACAGAGCAGAAGCATGGCACATTGTAGTCAACTTCAATCATCCTCTTCCAGTGATGTTAACCTGGGTCCCTCAGACAACCCTCATGCCAAGCCTACAGATTTTGATTTCCTTGCTGTGATTGGAAAAGGAACCTTTGGGAAGGTTCTTCTTGCCAAAAGGAAATCAGACGGAAAATTCTATGCTGTGAAAGTTTTGCAGAAGAAAATAATACTGAAGAAAAAAGAGCAAAAGAACATCATGGCCGAACGGAATGTGTTGCTCAAGAGCTTGAAGCACCCTTTCCTGGTGGGGCTCCACTACTCTTTCCAGACTACGGAGAAGCTCTACTTTGTCCTCGACTATGTCAACGGAGGAGAGTTGTTCTTCCACTTGCAGAGGGAACGGTGCTTCCCAGAGCCACGTGCTCGCTTCTATACTGCTGAGGTGGCCAGTGCCATTGGTTACCTACACTCCCTTAACATTGTTTACAGAGATCTGAAACCAGAGAACATCCTTTTGGACTCCGTGGGCCATGTGGTGCTGACTGACTTTGGCCTGTGTAAGGAAGGGATAGAGCCAGAATCTACCACCTCCACTTTCTGTGGGACCCCAGAGTATCTGGCTCCAGAGGTGCTGAAAAAGCAGCCCTATGACCGCACAGTGGACTGGTGGTGTCTGGGAGCCGTGCTCTACGAGATGCTGTACGGCCTGCCACCCTTTTACAGCCGCGATGTATCTGAGATGTATGACGGCATCCTGCACAAGCCCCTGAGCCTGGCAGGGGGCAGAAGCCCAGCAGCTTGTGAGCTACTTTCAGGACTACTGCAGAAAGACCCCCATCGCCGCCTGGGAGGCATTGCTGACTTTctGGAAATTAAAAACCAAGCGTTTTTCTCTGCAATAAATTGGGATGACTTGTACCACAAGAGAATTACCCCTCCATACAACCCCAATGTGAAAGGCCCTGCGGATACCCAGAATATCGATCCAGAGTTCACCAAGGAGATGGTGTCCAGTTCTGTGGGGTGCACCCCGGAGCTCACATCCAGCTTTGCTACCAGCAGCTCCAATGCTTTTATGGGCTTCTCCTATGTCCAAAGGTTTTTCTTCGAGGGATTCCACTTATTTCAATTATGTTTTAGAAATGATGTTTTGGGAAGTTCGCTAAGCGATCAGAGCATGGAGAAAGAACATCGCAACATTATAGCTATCAACGCCTCCAAGAGGGAGCTGTTCACGGCCAACAATGGCTACAAGTCGCTTCAGAAGAGACTGAGGGCACAGTGGAAGATTCAGAGCATTAAAGATGAGCTTTCCTTGGAGAAGCTAAATGGTGTAAAACTCTGGATCACGGCGGGACCTAGAGACAAATTCACCGCTGTTGAGTTGGAGGTGTTGAAGCAGTACCTGGATGGAGGAGGAAACATTCTGGTGATGCTTGGGGAAGGAGGGGAGATGAAGTACGACACCAACATCAACTTCCTCCTTGAGGAATTTGGCATCATGGTCAACAGTGATGCTGTGGTGAGGAATGTTTACTACAAATATTTCCATCCAAAAGAAGCACTTGTGTCCAATGGTGTGTTAAACAGagAGATAAGTGGTGCTGCGGGCAAAGTGGTAACAGGGGTTATTGATGATGAAAGCGCTGGCAACAATGCACAGGCTTTGACCTTTGTGTACCCGTATGGAGCAACCCTGAGCGTGATCAAGCCTGCGGTGGCTGTTCTGTCCACTGGCTCCGTATGCTTCCCTCTAAACCGACCCGTTCTTGCCTTCTATCAAGTCAAGGAGGGTGGCCGTCTGGCGGTGCTGGGATCTTGCCACATGTTCAGTGACCAGTACCTGGACAAAGAGGAGAACACGAAAATAATGGATGTGGTCTTTCAATGGCTTATAACGGACCATATTCACCTGAACCAGATAGATGCAGAAGACCCTGAGATCACAGACTACACCATGCTACCAGATACAGGGTGTCTGTCAGACCGCCTACGAGTGTGCTTGCAAGAGAGGGACGAGAACCCACGAGACTTTACCTCTCTCTTTGATACGTCACTCCTCAAGCTGTCCACCAACTCACTGCCTCGCGTCATCAGCTCTTATAAGCAGCTGAATGTCAAGCATGAGCCACTGCAGTTGATTCAGCCTCAGTTTGAGACGCCGCTGCCCATATTGCAGCCTGCAGCCTTTCAGCCTGCCTTTAAGGACCTGCCCCCTCCCACACTTGACCTTTTCGACCTTGATGAGACCTTCTCCTCTGAGAAAGTGCGGTTGGCGCAGCTTTCCAACAAATGCACGGACGATGATTTGGAGTTTTATGTGAGGAAATGCGGGGACATCTTGGGGGTGACTGGAAAACTGGACAAGGAGCAGAGAAACGCAAAACACATCCTGGAGCACATCTTCTTCCAAGTTGTGGAGTTCAAGAAACTCAATCAGGAGCATGACATCGATACAACAGAAGCAGGATTTTCTCCATTCTAA

Transcript

AAFF_T00190520

GCCAAATACCCACTTTTAAATTACCTAATTACAAAGTGCTTCGCAGGTGGTTTGTATTAACACAGTAGGTCTCGTGATGGTAAACGCCGagttccatttattttaagttGTGGAATACAGTGAGGCACCTGACGTGGTTTTCAGCATACTGGTTGACCTCTGACTAATAGACGTCGGCAATAAAGCTGGAACTACGCTTTTGTAAAAAGATTAGATAGATAAAATGGAACGCATGTTCTGCTTACCTTGTACACTAAAACTCCCGTGGCCCTTTCAAGAGCTTATAAAGAAAACGAAAGGAACCGTGGACAAGTTGTTATCGAAGTCGAAGGAAACGCTATGCAAGTGCACTGAAGCAGTTTCTCTCATGGACATGGAACAGAGCAGAAGCATGGCACATTGTAGTCAACTTCAATCATCCTCTTCCAGTGATGTTAACCTGGGTCCCTCAGACAACCCTCATGCCAAGCCTACAGATTTTGATTTCCTTGCTGTGATTGGAAAAGGAACCTTTGGGAAGGTTCTTCTTGCCAAAAGGAAATCAGACGGAAAATTCTATGCTGTGAAAGTTTTGCAGAAGAAAATAATACTGAAGAAAAAAGAGCAAAAGAACATCATGGCCGAACGGAATGTGTTGCTCAAGAGCTTGAAGCACCCTTTCCTGGTGGGGCTCCACTACTCTTTCCAGACTACGGAGAAGCTCTACTTTGTCCTCGACTATGTCAACGGAGGAGAGTTGTTCTTCCACTTGCAGAGGGAACGGTGCTTCCCAGAGCCACGTGCTCGCTTCTATACTGCTGAGGTGGCCAGTGCCATTGGTTACCTACACTCCCTTAACATTGTTTACAGAGATCTGAAACCAGAGAACATCCTTTTGGACTCCGTGGGCCATGTGGTGCTGACTGACTTTGGCCTGTGTAAGGAAGGGATAGAGCCAGAATCTACCACCTCCACTTTCTGTGGGACCCCAGAGTATCTGGCTCCAGAGGTGCTGAAAAAGCAGCCCTATGACCGCACAGTGGACTGGTGGTGTCTGGGAGCCGTGCTCTACGAGATGCTGTACGGCCTGCCACCCTTTTACAGCCGCGATGTATCTGAGATGTATGACGGCATCCTGCACAAGCCCCTGAGCCTGGCAGGGGGCAGAAGCCCAGCAGCTTGTGAGCTACTTTCAGGACTACTGCAGAAAGACCCCCATCGCCGCCTGGGAGGCATTGCTGACTTTctGGAAATTAAAAACCAAGCGTTTTTCTCTGCAATAAATTGGGATGACTTGTACCACAAGAGAATTACCCCTCCATACAACCCCAATGTGAAAGGCCCTGCGGATACCCAGAATATCGATCCAGAGTTCACCAAGGAGATGGTGTCCAGTTCTGTGGGGTGCACCCCGGAGCTCACATCCAGCTTTGCTACCAGCAGCTCCAATGCTTTTATGGGCTTCTCCTATGTCCAAAGGTTTTTCTTCGAGGGATTCCACTTATTTCAATTATGTTTTAGAAATGATGTTTTGGGAAGTTCGCTAAGCGATCAGAGCATGGAGAAAGAACATCGCAACATTATAGCTATCAACGCCTCCAAGAGGGAGCTGTTCACGGCCAACAATGGCTACAAGTCGCTTCAGAAGAGACTGAGGGCACAGTGGAAGATTCAGAGCATTAAAGATGAGCTTTCCTTGGAGAAGCTAAATGGTGTAAAACTCTGGATCACGGCGGGACCTAGAGACAAATTCACCGCTGTTGAGTTGGAGGTGTTGAAGCAGTACCTGGATGGAGGAGGAAACATTCTGGTGATGCTTGGGGAAGGAGGGGAGATGAAGTACGACACCAACATCAACTTCCTCCTTGAGGAATTTGGCATCATGGTCAACAGTGATGCTGTGGTGAGGAATGTTTACTACAAATATTTCCATCCAAAAGAAGCACTTGTGTCCAATGGTGTGTTAAACAGagAGATAAGTGGTGCTGCGGGCAAAGTGGTAACAGGGGTTATTGATGATGAAAGCGCTGGCAACAATGCACAGGCTTTGACCTTTGTGTACCCGTATGGAGCAACCCTGAGCGTGATCAAGCCTGCGGTGGCTGTTCTGTCCACTGGCTCCGTATGCTTCCCTCTAAACCGACCCGTTCTTGCCTTCTATCAAGTCAAGGAGGGTGGCCGTCTGGCGGTGCTGGGATCTTGCCACATGTTCAGTGACCAGTACCTGGACAAAGAGGAGAACACGAAAATAATGGATGTGGTCTTTCAATGGCTTATAACGGACCATATTCACCTGAACCAGATAGATGCAGAAGACCCTGAGATCACAGACTACACCATGCTACCAGATACAGGGTGTCTGTCAGACCGCCTACGAGTGTGCTTGCAAGAGAGGGACGAGAACCCACGAGACTTTACCTCTCTCTTTGATACGTCACTCCTCAAGCTGTCCACCAACTCACTGCCTCGCGTCATCAGCTCTTATAAGCAGCTGAATGTCAAGCATGAGCCACTGCAGTTGATTCAGCCTCAGTTTGAGACGCCGCTGCCCATATTGCAGCCTGCAGCCTTTCAGCCTGCCTTTAAGGACCTGCCCCCTCCCACACTTGACCTTTTCGACCTTGATGAGACCTTCTCCTCTGAGAAAGTGCGGTTGGCGCAGCTTTCCAACAAATGCACGGACGATGATTTGGAGTTTTATGTGAGGAAATGCGGGGACATCTTGGGGGTGACTGGAAAACTGGACAAGGAGCAGAGAAACGCAAAACACATCCTGGAGCACATCTTCTTCCAAGTTGTGGAGTTCAAGAAACTCAATCAGGAGCATGACATCGATACAACAGAAGCAGGATTTTCTCCATTCTAAAAGGaagcaaaatgtgttttttccgaTTTGTGTGTTGTCGGGGTTTGAATGTACTATACACATGGATTTAAATTCCATCCAATGGAATTTCCTATGGCATGACATTCAATTTGTATAATACAATTCATGTAGTGTTCATTTGTAAATATTCTGAGCATATTCCCTTGATTGTTGGGAATCAACATGACATGGAGTAAGGAGAAATATTCATGAATCTCAATGGTTTAATAATTGTTCACGTTTATTTTTTAAGACATGTTTACAAATGAAGTTCAAATGTTCAATATAAGCACTTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF00433	Pkinase_C	Protein kinase C terminal domain	Family	Interproscan
PF09822	ABC_transp_aux	ABC-type uncharacterized transport system	Family	Interproscan
PF21178	Itf52_C	Intraflagellar transport protein 52, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR000961	Domain	AGC-kinase, C-terminal	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR017892	Domain	Protein kinase, C-terminal	Interproscan
IPR019196	Domain	ABC-type uncharacterised transport system	Interproscan
IPR029062	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR039975	Family	Intraflagellar transport protein 52 homolog	Interproscan
IPR048643	Domain	Intraflagellar transport protein 52, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12969	NGD5/OSM-6/IFT52	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005814	Cellular Component	centriole	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0030992	Cellular Component	intraciliary transport particle B	Interproscan
GO:0042073	Biological Process	intraciliary transport	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-