Gene detail

Detailed information of KAJ8384217.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8384217.1	HOMEOBOX PROTEIN ROUGH-RELATED	AAFF_1.1_unplaced_276	733141	736672	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00207650

ATGGATGGTCTTAGTCCGCTGACAAACTCTGGCAAGTCCGTCACCATTGGCGCCGTGGTGGTCACGTGTCTCACCACTGAGGTGATATGTGTTGCCGGGATGCCCAACGCAGGGGTCACGACTTATGGGTTGCAGACCGGGTCGAACTCGGACTACGGACACCATCAGTACTTTGTCAACCAAGAGCAGGACGGAATGTACTTTCACTCCGCGGGCTTTTCCACCTCAAATGCCGGTCCCAACCTCGGTCCCCTCGCCGGCGGATACTGCGGGACACCGGGGGCTGTTCCTAGCAGTCAGTACGAGCAGCAGGGCTGTGGGAgccaggagcagcagcagggtTTTTTGCACAGCACCTATGCCAACATGTCCCCTTCCCAGGGCGGAGAAAAGGATCTGAATTGCTATCCCGATCAAATACCATCTGGGAAAACATTTGACTGGATGAAAGTTAAGAGAAACCCACCTAAAACAGCTAAAGTTGCGGAGTATGGAATCCACGGCCAGCAAAACACCATCCGCACCAACTTCACCACAAAACAGCTAACTGAGCTGGAAAAAGAGTTCCACTTCAACAAGTACCTGACCAGGGCCAGGCGCGTGGAGATCGCTGCCACGCTGGACCTTAACGAAACTCAGGTGAAAATCTGGTTTCAGAACCGCAGGATGAAACAGAAGAAACGAGAAAAGGAAGGATTGGCCCCAGCCAGCGACCGGGGTTTGTCAAAAGAACTCGGAGAGAACTCAGACCACTCTACTTCCTCATCCCCGGGAGCTTCTCCCAGCTCGGAGACCTCATGAGTCACGAGTCAACAATTCTTGACATTGAACTGGTGAtcaacattaaaatatattattattattaataataataataataatagtaaaaaagTGATATATATATCTACAGCAACAGTTTATTTTACGTGTATATTTCAATTCCACGCAATATATTCTATGAGATTGCTGTTACGCCCTCAATGCAaataataactaaataaattatCACATAATATCAGTTATTGGTGCTTCCCCGTGTTGAGGAACCTTATGCCAAAGCGGAATAGAAATAGTTCCAATATTTCCAGGATGACAGGACCTTAAAAGCGAATCGTTGAGGACCCACGTTGGGGATGCACTTTTGCATTTTTACAGAGCTGAAAGTGAGCACGTTACAAGTTTGCCTCATTGACGTACCACGTAGGCTACTGCCTACCACGTCTTActattacaatgtttacaaaaactGATATCGCAGGGGTCACTGGGAAATTTGTTTTACACTTAATATATGTACGTTTCCTTCCAAATACGTGGCGAAATAAGGAGGATAATAATGAATGGTGGCGCCATTATCGCTAATAATGGCACATGAGTCTTTGCACTATGACGTTACAGGGTATGTTTTCAAACGTTCAGGGTCTAGAAAAGTTTACCTTAAGTTTTAGCCAATAGGCTACATTTATGTCACAGATAGCTTATCGGTTCACAATTTTAACATTGCCAATGTGACattatgaataaatgaaatatacttttattataATCAGTTAAAATTAGGGATTGGAATGTTATAGCTGTGAAAACACACAAATCGATCTGAATGAAAACTGGACAACCGtgatgatgtatttattttatttaatgggtAGGTCACAATAGCCTATCAGTGCTGACATGTGATTCGAAACTACTGAGTGAATAAAGGTTGCCTTTTTAAGCCTACAGGTCTGAATTATCTGAGTGCCCCAATTTTTGAGAAGAGTGTAAATTGTTGTAGATCAACAGGGCTTGTGTCAAATATGTGTTCTCTTTGTTCGCTGTAATAAATCGATGATGGGTGTGTACAGACGGACTGAGTTGTATTAGTTCATTTCTGTACTGCATTTGTGTCTTACGGGATCGGTGCCACAATGAAGATTGTATCCCTCTCATTTCTGTAactactcaaataaacacaaatattatTCTCAGAGTCCGTGCTAAATTCCAAGCTATTATTTTTTcgttaattgtttgtttgtgttgtgtcttGTCTAAATGTG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR046327	Family	Homeobox protein Hox-A1/B1/D1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45946	HOMEOBOX PROTEIN ROUGH-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-