Gene detail

Detailed information of KAJ8383328.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8383328.1	CREB-REGULATED TRANSCRIPTION COACTIVATOR	AAFF_1.1_unplaced_296	397064	458911	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00221880

ATGCAGGGAAGCGTGGGTCTACTCACCTGTTTGCTGCTGTTCTGCGGCTGGGCTCCGGCGGAGTCGCGGCCACGTCTGGCCCAGGGTCCTGCTCGGGACGTCCTGGGGATGGAGGGGCGACCCGGAGGGCGTGGGGAGGCGGCGGCGGAGCGGGTGCGGTGGAGAATGCGCCTGGGGAACCAGCACCCCTCACTCAACACCTCCCGGACCATTCTCCCAACATGGGGTGACACAGCTGGAGCTGAGACGGAGGGCGGCAGGGAGGCCTGGTCGGGGCGGAGGGCCCAGCGCTTCAGGGGCGCTTCCCGCCAGACTCACCTCCTCAGGCGTGAGCTGGCGCTGTTGAGCGCTGAGCTGAAGGTTCAACGGCCTTTACGGGTCAAACCCCCGGCCGGCCATCTGCAGGTCGGGCGAGAGGTCGACATTAAGGCCCCGGTTCTCCCCCACGCCTCGGAGTCCGCGGGCCACGGCGAGCGGGACACCGGGGGCGTGGCCGAGCAGTGGAGGGCGGAGCTCGAGGGTCTGGCGCCGCCGGGCGAGAGgacaagaggaggaggaggtcagGAGGACCTTTGGGCGGTCAGGGACATCGCCACGGAGACAGAGGCCGGGCGGGCCGAGGGGGAGGGACGGCGGTGGCGACGGCCGCGTTCGGCGGAGGGCGAGGACTGCGACGGGGAGGGCAGGTGCTGCCGCAGGTCCCGGCGCGTCTCCTTCAAGGACATCGGCTGGGCGGACTGGGTGATGGCCCCCGAGGCCTACACCGTGTACTTCTGCGACGGCGCATGCCCCCACAACTACCGGCCCGCCAGCATGCACACGCAGGTCAAGGCCCGCCTCCATCACATGACCCAGGGGGCCACGCCTCGGCCGTGCTGCGTGCCGGCGGCCTACGAGCCCATGGTCCTCCTGCACCATGACAGCCAGGGCAAGCTGACCCTCACCTCCTACAATGGCATGATCGTCAGCCAGCCCTCgctgagatcctccctgacggcTGAGAAGGTTCTGTTTGGCCCCAGTGaaggatgtaggaccccggagctgcagcgccagtggaggatcatgacccccgttaagcagatcatttatgtaaataaggaagagcagaggtcccagcaccgatccctgcgggacaccactgcccacagcaccgagGAAAGCCCTCCATtcttctcggtgagcttgtgccagctctccctctcccctccgccctggggcggacagccaatcgctggcccgaacggggctcccggccagagccaggctggcgcagctggggatcgaaccccggccgcagtgggcaacctgcattctggACATGAGATTGTTAAAGAGGCGCGCATTGACGCCGCCCACGCGCACGGACGTGGGCACGCTTACGTCTCATTGAagggaaaggaggaggagagcagcaaaAATAATATGGCGACCTCAAACAATCCGCGGAAATTCAGCGAGAAAATCGCTTTGCACAACCAGAAGCAGGCGGAGGAGACGGCGGCGTTCGAGGAGGTGATGAAAGACCTCAGCATCACCAGGGCAGCCAGGTTACAGCTGCAGAAGACTCAGTACCTGCAGCTGGGACAGAATCGAGGGCAGTGCTATGGAGGCTCGCTGCCCAACGTCAACCAGATCGGAAACGGCACCACTGACTCGCCTTTTCAGccaatcgcctcgccgcccctggtggcgctcccggccagagccgactctggcgagacagggaatcgaaccttggtctccgtggccagcgtcggacattCTAGCGCAGGCAGAcctcagACCTCCTTCCAGACGACAGACCTGGATACGAGTCGAACGAATCGGCACCACGGCCTGGTGGACCGGGTTTACCGAGACCGGAACCGCATCACGTCCCCACACCGCAGGCCCCTGTCTAACTCTACAGGGTTCCAAAGGGTTCTGAAGAGAGTGTCGCCGTTTTTGTCCTTGACTCTGCGTGCCACATTGACAGCTGTCCCTATGGTGCTGTGTATCTGTCACCTCCACCTGACACCAGCTGGAGGAGCGCTGTTCGCAGTGAGCGTGGGCGTGGGCCTCCAGACTGGACAGGGCGTCCCTAACCCTCTTCCTCACGGCCTGCAGGACCAACTCAGACTCTGCACTGCACCAAAGCACCCTGAACCCGGCTCCTCAGGATTTGCTGGAGGATCACAGGACCTGCAGCCCAACCTGTGCCTGAGCATATTTCCATCTCCTGACCAGGAAATGAGCACCTCCCTCATCCCGGCCACTCACAACACGGGGGGGTCACTGCCTGACCTCACCAACATCCAGTTCCCCCCCCCACTGCCTACCCCACTGGACCCCGAGGATACAGCCACCTGCCCCGCCCTCAGTGCCAACAACATCAGCCTGACCGCCACCCTCACCCACCTGGGCCTCACCTCCACCAGCCAAGGTGTAGGCCTCATCCAGCCTGTTCTGACGGTGACCACTCAGCACAGACCGCAGGACAACGGCCTGGGAAACACACCCCTCCAGcagctctccccctccctctcgccCCCCCTCACCATCGCCCAGGCCGTGACGATGGACACTATGACCCTGGAACAGCAGCTGTCACAGTACCCCTTCTACTGCCCAACCACGTCGCAGGCCCAAGATCAGCAGGCAGCCAATCAGAACGCTCAGCTGACCAGGCTGGCACAAGTCCCGCCCCTCTCCatcaccaccacctcctcctccgtccTTCCACAGACCCCCACCACAGCACAGACGCAGACAACGGCTGTTGGCATGGACATCAACTCTCACACGTCCATACTGAGCAGCATCTACGGCGATGGCTTCTATGAGCAGCAGCTGGCCTCCCAACAGACCAGCGCCCTGTCCCACCAGCTGGAGCAGTTCAACATGATGGAGAACCCCATCAGCTCCAGCAGCCTGTACACCCAGGGCTCCACCCTCAACTACACGCAGGCGGCCATGATGGGTCTGACGGGCAGCCACGGcaccctgcaggactcccaGCAGCTGGGATACAGTAACCATGGCAACATCATCCCCAACATCATCCTCACAGTGACGGGAGAGTCTCCGCCCAGCCTGTCCAAGGAGCTGAGTGGCTCCCTGTCGACGGACGTCAGCTTCGACGGCGACTCCCAGTTCCCGCTGGACGAGCTGAAGATCGACCCCCTGACGCTGGACGGACTGCACATGCTCAACGACCCCGACATGGTGCTCGCCGACGCCGCGACGGAGGACACCGTCACGCACAGCTTTCTCACTGCCGTGACCGTGGAATTGTCGCAGAGCAGCACGTTGCTTTGGAACTACATGCGCTACAGCTGCACTGCTCGTTGGCAGGTGTTTGGAGGTGTGCATGCAACCAAGAACACTCAGACCGTGTATTCTTACTGTGGAGCTAAGGGGGATGGCTTCCCCTGCTTTGGAATGGAGGGGGAGGTTCCACTCCTCTGGAGTGCAGATGGCGAGGACGGAAATGTCACCAAAGTGTTGTGGCGCACGGAGGACGGCTCAGTATTCACGGCTGTGGTAAATGACTTCCTGGTTGTGTTACACGGTCACCCACCCGTCTCTTCGGAggattcccccctcccccgcccgccGATCCCCACCGACCAGGCAATGACAGCGGCCTCGGCAACCCCGCAGCAGATGAGAGACCGGCTGCTGCAGGCCATCGATAGCCACAGCAATCAGATCCGCAACATGGTGGCTGTTCTAGAAGTTATTTCCCATTTGGAGAAATACCCTATCACCAAAGAAGCACTTGAGGAGACTCGACTGGGGAAGCTGATCAATGACGTGAGGAAGAAGACGAAGGACGAGGACCTCGCCAAACggggcgggggctgggggcggggcggggccggggacgccaggctcagccaatggcgGCGCTCACCCGTGCCGGGCCGACGCCacgccccccaccctctctccggCGGGCGACCGGCGGCGGAGCTGAAGAGCCGCAACGACTTCCACAACACGTACTCGCCCAAGGCGGAGAAATCGGCCCGCAAGCGCAAGGGCGAGCCCCGGGAGCGCGACGGGCCCAGCCCGCCCGCCAAGGTCTCCAAGACGACCACGTACGAGCGGATACAGAACTCTACGCCGCCGCCCACCAACGGCATCGGCGGCagcccctccccgccccccgcGCCGGGGGAGCCCGACGGCCCCCAGCCCCCGCCGCCCGACCCGCTGGGGAACGAGAAGCACGGCAAGATCCCCGTCAACGCCGTGCGGCCGCACCCCAGCTCCCCGGGCCTGCAGCTCCCGGCCAAGCTGCCCAGCACGTCCTCCCTGCTGAAGGCCGCCGTCATGCAGCAGCACGCCAAAATggaggaggcggcggcggcggcggcggggggggggggggcagggggcggggcggggcagggccaGCCCCGGAGCCCCCGCTGCGCCTCCTTCAGCCCCCGCAGTACCCGGCAAGAGACAATGGCACGGCCGGCCGCCACCCCCCTGCGGCAGGGCTGCCCGGCCCCGTCCCGCCCCGCCCCGGAGCGTGAGGCGGAGGCGTCGGGGCCGGGCCCCTCCTGCGGGGCGGGCCGGCTCGAGAGCGACGGCGCCCTGGAGGGGGGCAAGAGGCGCAAGAAGAAGTACCGGCCGCGGGACTACACCGTGAACCTGGGCGGCCAGGCCGAGGAGAGGACCAAACCCGTGCGCTTGAAAGAGCGCcggctgacctttgaccccgcgACGGGGCAGATCAAGTCCCTCACGCACAAGGAGCCCtaccagggggtgggggaggagcctCTGAGGCCAGCCCTGCCCGAAACCCTGCGGACAGAACCCCCGCCCcttcccctgcccctcccccaacccctgcccctgcccccgcccctggccccgccaggcgcccccctccccagcccctTCCAGCAGACCAACTGGAAGGAGCTGTCCCGCAACGAGATCATCCAGTTCTACCTGAACATGCAGAGCAACGTGCTCACGTCGTCGGGGGCCCAGACCCCCGGGGCGCACTTCTTCATGAGCGAGTACCTGAGGGGCGAGGAGCGCCACATCAAGGAGGCCAGGAAGACGCACGTCCTGGTGCCCAGCAGCGCCTCGGACGCAGGCACGCCGGGGGTCAGCCGCGAGGTCACACCCGCCGACCTGCGCAGGCTGAGCGGGGAGCACTGGCCGGGGGTCAACGGCTGCTCCGACACCAAGGACAACTGGTACGACTGGACGCAGTGCATATCCTTAGACCCGCACGGGGACGAGAGCAAGCTGAACGTCCTGCCCTACGTCTCCCTAGACTGA

Transcript

AAFF_T00221880

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00019	TGF_beta	Transforming growth factor beta like domain	Domain	Interproscan
PF08711	Med26	TFIIS helical bundle-like domain	Domain	Interproscan
PF12884	TORC_N	Transducer of regulated CREB activity, N terminus	Family	Interproscan
PF12885	TORC_M	Transducer of regulated CREB activity middle domain	Family	Interproscan
PF12886	TORC_C	Transducer of regulated CREB activity, C terminus	Family	Interproscan
PF15693	Med26_C	Mediator complex subunit 26 C-terminal	Domain	Interproscan
PF15694	Med26_M	Mediator complex subunit 26 middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001839	Domain	Transforming growth factor-beta, C-terminal	Interproscan
IPR003617	Domain	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	Interproscan
IPR017923	Domain	Transcription factor IIS, N-terminal	Interproscan
IPR017948	Conserved_site	Transforming growth factor beta, conserved site	Interproscan
IPR024783	Domain	Transducer of regulated CREB activity, N-terminal	Interproscan
IPR024784	Domain	Transducer of regulated CREB activity, middle domain	Interproscan
IPR024785	Domain	Transducer of regulated CREB activity, C-terminal	Interproscan
IPR024786	Family	CREB-regulated transcription coactivator	Interproscan
IPR029034	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR031416	Domain	Mediator complex subunit 26, C-terminal domain	Interproscan
IPR031417	Domain	Mediator complex subunit 26, middle domain	Interproscan
IPR035441	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13589	CREB-REGULATED TRANSCRIPTION COACTIVATOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008083	Molecular Function	growth factor activity	Interproscan
GO:0008140	Molecular Function	cAMP response element binding protein binding	Interproscan
GO:0032793	Biological Process	positive regulation of CREB transcription factor activity	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0051289	Biological Process	protein homotetramerization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-