Gene detail

Detailed information of KAJ8377935.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8377935.1	RIBOSOMAL PROTEIN S7	AAFF_1.1_unplaced_336	305885	338788	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00249980

ATGACAACGAGGGGCAAGGATAAGGGGTGCCGTGTGTGCAGAGGGCCTCTACAGGGTAACCAACGGCGTTGGCTGTTTGGAGGTCAAATCAAGAGAGGTGGTCAGACACAGACTCCAACCGATTCCTCCCGCAAAGGAAGTTTGACCAGTTCTGCTCGGAGCAGCCCCTGGGgtagcaCTCTTTCACTGGGctcatctcactctctctcaagAACTCACTCCCCGTCATCTCCCTCTAGAGGAGTTGACCTGCTTGCTATTCTAAAACACGTATTAGGGCAGCCTATACTACGAGACGATGGACGGGGGGAATTTTTGTGTGGGAAATGTGTGTCAGTTTTAGAGCGGGTTTTTAAATTTGACACTGTCATTGCTAGAGTGAAAGTCTTATCTTCTGAGAGGCTGCAGAAGCTGAGTCAGGAGAGGAACAAGACCAGGAAATGGCTGTGCGGTGTGTACAGACAGCACCATCCCCAGGATTGTAAAATGAGTGAGGGCTCCAGTGAGGAAGAGgacggagagggagatgggACAGAGACAGCAGTAAGGGATGGCTATAGGGAATTGCTGAGGAAGAATATGGCCCTGTCCGAATTTGAATGCTGGTCAGAAAAATGGGACATCTGTCCTTATTTCAGAAAAACGGGTAAGAGATGCAAGAGGGGCAAGAACTGTGAGGGGTGTGACTCTCTGAGGGTGTCTGACTCGGACTACGAGTCGGTGTGTGGAGTTCCCCGTCGCCTACCCTTTCAGCCTTTCTCCCCGTTGCCCCTCTCTCGTGACAAGTCCCGTAGCATGCCACTGCAATGGTCAAGAGTACCATCTGTCAGCTCTAGTCCGATGTCGCGGGGTAGCTCTTGCATCTCCTTACAGGGGCCTTCTCACGCTGACTCCATGCAATCCCTGGACTCGCTGGATGACAATGACCCCTTTGATTGGCCAGCGGAGCGGTCAGTCAACTTGGAGAACGTGCTGAGAGAGCTAAAAGATATAGAGGCGAGACCAGTCAATTCTCCATTAGGGAGTCGGATTCCAGTTTTGGACAGGATTAAGAGAGGACTTGGGGGAGGTGCAGAAGATCTATCAGGGGCAGGGTTATCCAGGGTGCTGAGTTTTGTAGAGGGGGATGATCTGGGAGATGAAGTGGATGGAGAGACCAAAGATGTTTTGACTGAGTTGAGAGACGAATTTATTCCTCTACACAGAGAGAGAAGTACAGGTCAAGTGCATTTTGCTGTCAGGCAACTTCGAGGACAACTGGATCAAGCTCTCACACATATCAGGAACCTAGAAGCACAACTCAAGGATGTGAACAAACCtacagagatagagagtgagaCCAGTAACCAGGTTATGCCTGCACAGGTGGACAGTGAGAAAGTGCTCTTTCAGACCATGAGGAATACATTGCACAGCAGAGAGCGAGTCATACAGGACTGTATAGCTTGCATCAGACAGCTGTGTGTTGGAGCAGGATTCGGCACAGATGTGAGCAACAGACTGATGGAAAAACTGACTGACACACTGAAAAACATACACGCAGAGTCTGAGCGAGTCCTGGAGTCCAGGCTGtcagagctgagagagagggagcaagggatggagagagagatggaggctCTGAGACAGGctgccagcgagagagagagagatctaaacacactgaacacagtgcTGCAATGTAACCAAGACATCATAAACGAGCTGCGGGTGGAGCTGGGAGAATGGGACCGAGTGCAAAGGGAGGGGCAGCAAGAGAAGGAGGTGTGGAGAGAGCGAGACCAGGCCATGGTAGCCCTACTGAAGGAAAAAGAGGCACTCACAAGCTGCCTAAAGGAGGCACTGGAGAGCTCCCAGAGGGATGTTCAGgccctatcagATTCTGTCATTGGCCAGGGAGTATCAGGTGGTGGAGCTGAGGGTGCCCTGGCCTATCAGCTCAAAGAGAAGGAGACATTGCTTGCAGGTTGGCTGAAAGACAGAGAAGAGCACAGTGCTTCCCTACGGCAGGAGGTTATACAACTCACGGCAGCCCTCAAGAAAGTTGAGACACTGGTGCAGACGCAGAGAgccagtcacacagagacagcatCCGCGCTATCTGAGCAGCTGAGAAACACACAGAAGGACctgcgggagagagagcgagaaagaaagGAGACTGAAAGGGAGCGACagaaggagagggaagagagagaccgGGAGCAGAGGAAAGTCAGAGAGAGCCTGGAAAATAGAGACCAGCTCATACAGCAAGTTCTCTTGGACTCTGAGCAGCGAGACCAAATGCTTACAGAACTGCAAGAGAATATCCTGACCAAAACAGAGCCTCACACTGCCCTGAAGCACACCCTCTCGGGGAAAGATCGCGACAATGTCCCTAATGCACATACGAGGGACAAGGTCAGACCAGTGTCTACAGGGACTACGCGCTACACTCTAGCCTCTGCCCCATTTGTTGCCCCCTTTCCACCACCCTGTTTGAGAGAGCAATGTGCAGAGGTCAGCGTGAGGGTTGCTGGGGAATACATGCGTGATGTtagaggggtggaggggcagTTGCGCAGTCAGGCTGTTCGAGTGGGGCAGGAAAGCATAaagctggagagggagagagggtatTTGGAGAGGATGCTGAGATCCCTAAGGAAAGACTTGCTGGTGAACAAAAAAAGTGTGGAGGAGCGGACACTGAGACCGCTTACCACTGAGACGGGCAGAGATGGTGCAGACATTCTGCTGGATTGTGAGAAGAAGGAGCTGTCTGAGCTGAAGACTCAGACGGAGAGTACACTGAGAGATGTGCTCACACAGCTACAGGCCCTCAGTCAGTGCAGTAAGCTGTTATTAGAGTGTGCCAGTGAGAGATCCCGAGTTTTGGATCTTCTCCCACACAGTGGATATCACTCAGCTGGAGGTCGCTGCACCCCTTCCCAAGTTACCATGAAACCCAACCCCACAGGGCCCTACACCCCAGAATGTAAGCAGGCAATGGAATCCTCAAGCTTGGCTCTGAACCAATCACAGCTGCTCAGGCAGCAGATTCGACATCTGTTAGGTGAGGCAATTGCCCGCCAAAAATCAGTCCACCAATCAGTGAACGAAGGCCTGGTGAAGAAAATAGCTGAGACAGTCAGCCTGAAGCAACACCTTACAGTGAGCTCAGCCTCAGCCAGGCAGGCAATTTACCGCAAGCAGAGACAACTGAACTGCATTCAGCACAGCCATGACAGAGCAGTGGGCCCAGTGTCCAGTGCAGATCTGTTATCCAGAGAGAGACTGGACAGGCCAATAGTGCAGGTTTACCACCGACATCCTGGCACTCAGTTACCAGAAGCTATGCACCTCATACAGggTAGCGCTGTGGTGCAGCAATGTCTGCTGTCCTCGGGTGGAGAACTGGCTCAGCTGTGTGGCACTCGACTGCAGTTGACGGAAGACCTGCGAGGGAAGGGGGCAGCGGCCCAGGTGGACTCTGCCATTAGCCGTACACACGACGAAATGACTGACTGGGAGCCTACCCCCGCTGTTGCGGAGTCTCCAGAGATCAAACTCTTTGGGAAGTGGAGCACTGATGATGTGCAAATCAATGACATCTCTCTGCAGGACTACATTGCTGTAAAAGAGAAGTACGCCAAGTACCTTCCACACTCTGGGGGCCGCTATGCTGCCAAGCGTTTCCGCAAGGCGCAGTGCCCCATCGTGGAACGCCTCACCAACTCAATGATGATGCATGGTCGCAACAATGGCAAGAAATTGATGACTGTACGCATTGTGAAGCACTCCTTTGAAATCATTCACCTGCTCACAGGAGAGAATCCCCTTCAGGTTCTGGTCAATGCCATCATCAACGGTGGACCCCGTGAGGACTCAACCCGTATTGGACGTGCTGGAACCGTGAGGAGACAGGCTGTGGATGTCTCACCTCTACGTAGAGTCAACCAGGCTATTTGGCTGCTGTGTACAGGAGCCAGAGAAGCTGCCTTCAGGAACATAAAAACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCAGCCAAGGGTTCATCCAACTCGTACGCCATTAAGAAGAAAGATGAGTTGGAGAGAGTGGCAAAGTCCAACCtCCCTCTGTTTTGTTTCACCTGTGTGTTTCCTACCATCTCTCCATTGGACTGCATCAAGTACCCGCAGAGGTGCCCTCCGGGCCAGCTCTGTCTCTCAAGCACAGCAGTCGGCACACGAGGAGATTTCCGTGTGGTCATGTATGAGAAAAGCTGTGttctctcctctttgtgtggTCTCACTGGAGAGAAATACACCATGGGCTTAAACTTCACCTTCACCAATGAGTGCTGCGACACTAACCTGTGCAACGGGGCCACTGCAGCCACTGCTTCCTATTCGGGGTCCACTACACTCATTCTCCTCTCATTTGCTCTTGTACCCTGGTGA

Transcript

AAFF_T00249980

ATATCGTGCTTTATGTGCGTTTTCTTGAGAAACGGAGTGAGATTTGAAACGTTCATTTGAAATTAGTTTTGGACGTCCGTACGTGTACACGTTTACGGCAGAGAATGTGTTTCCGTGTTTCACTAGgtagagagcgcgagagagtgAAGCCAGATTTGGAAATGCTGAATCAGAAAGTGTGCGTAATGgtgatttaaatatgtttttaattcatGCTCATTATTTTCAACACTGTCGCTCGCAGTTCTGCTTGCTTTCTCTGTGCTTCTATACGGCTGATATATGTGGTGATTTGTTCGCTAAGAGTTAAAGAAACGAAGAACACCTGGTGTAACAAGTTGGCTGCTGATACGGaataaagttgaaattgggGTCGACGCAACTAGTGCAAAATTCTCTTACGTCTATGTCGTGGGGCTGAGGTCGTACGACTTCTACCGCAGATAAAAGGCAAACTTCTGAACCACTATCGGAGTTCGTACTGTTGTTCCGGATGTAATCACTGCTAGCGACCAGAACATTATTGAACATTCACCTGAACCTCATTTATGGACAGTTGAGAATTATCTTTCCTTGCGGTCACCATGACAACGAGGGGCAAGGATAAGGGGTGCCGTGTGTGCAGAGGGCCTCTACAGGGTAACCAACGGCGTTGGCTGTTTGGAGGTCAAATCAAGAGAGGTGGTCAGACACAGACTCCAACCGATTCCTCCCGCAAAGGAAGTTTGACCAGTTCTGCTCGGAGCAGCCCCTGGGgtagcaCTCTTTCACTGGGctcatctcactctctctcaagAACTCACTCCCCGTCATCTCCCTCTAGAGGAGTTGACCTGCTTGCTATTCTAAAACACGTATTAGGGCAGCCTATACTACGAGACGATGGACGGGGGGAATTTTTGTGTGGGAAATGTGTGTCAGTTTTAGAGCGGGTTTTTAAATTTGACACTGTCATTGCTAGAGTGAAAGTCTTATCTTCTGAGAGGCTGCAGAAGCTGAGTCAGGAGAGGAACAAGACCAGGAAATGGCTGTGCGGTGTGTACAGACAGCACCATCCCCAGGATTGTAAAATGAGTGAGGGCTCCAGTGAGGAAGAGgacggagagggagatgggACAGAGACAGCAGTAAGGGATGGCTATAGGGAATTGCTGAGGAAGAATATGGCCCTGTCCGAATTTGAATGCTGGTCAGAAAAATGGGACATCTGTCCTTATTTCAGAAAAACGGGTAAGAGATGCAAGAGGGGCAAGAACTGTGAGGGGTGTGACTCTCTGAGGGTGTCTGACTCGGACTACGAGTCGGTGTGTGGAGTTCCCCGTCGCCTACCCTTTCAGCCTTTCTCCCCGTTGCCCCTCTCTCGTGACAAGTCCCGTAGCATGCCACTGCAATGGTCAAGAGTACCATCTGTCAGCTCTAGTCCGATGTCGCGGGGTAGCTCTTGCATCTCCTTACAGGGGCCTTCTCACGCTGACTCCATGCAATCCCTGGACTCGCTGGATGACAATGACCCCTTTGATTGGCCAGCGGAGCGGTCAGTCAACTTGGAGAACGTGCTGAGAGAGCTAAAAGATATAGAGGCGAGACCAGTCAATTCTCCATTAGGGAGTCGGATTCCAGTTTTGGACAGGATTAAGAGAGGACTTGGGGGAGGTGCAGAAGATCTATCAGGGGCAGGGTTATCCAGGGTGCTGAGTTTTGTAGAGGGGGATGATCTGGGAGATGAAGTGGATGGAGAGACCAAAGATGTTTTGACTGAGTTGAGAGACGAATTTATTCCTCTACACAGAGAGAGAAGTACAGGTCAAGTGCATTTTGCTGTCAGGCAACTTCGAGGACAACTGGATCAAGCTCTCACACATATCAGGAACCTAGAAGCACAACTCAAGGATGTGAACAAACCtacagagatagagagtgagaCCAGTAACCAGGTTATGCCTGCACAGGTGGACAGTGAGAAAGTGCTCTTTCAGACCATGAGGAATACATTGCACAGCAGAGAGCGAGTCATACAGGACTGTATAGCTTGCATCAGACAGCTGTGTGTTGGAGCAGGATTCGGCACAGATGTGAGCAACAGACTGATGGAAAAACTGACTGACACACTGAAAAACATACACGCAGAGTCTGAGCGAGTCCTGGAGTCCAGGCTGtcagagctgagagagagggagcaagggatggagagagagatggaggctCTGAGACAGGctgccagcgagagagagagagatctaaacacactgaacacagtgcTGCAATGTAACCAAGACATCATAAACGAGCTGCGGGTGGAGCTGGGAGAATGGGACCGAGTGCAAAGGGAGGGGCAGCAAGAGAAGGAGGTGTGGAGAGAGCGAGACCAGGCCATGGTAGCCCTACTGAAGGAAAAAGAGGCACTCACAAGCTGCCTAAAGGAGGCACTGGAGAGCTCCCAGAGGGATGTTCAGgccctatcagATTCTGTCATTGGCCAGGGAGTATCAGGTGGTGGAGCTGAGGGTGCCCTGGCCTATCAGCTCAAAGAGAAGGAGACATTGCTTGCAGGTTGGCTGAAAGACAGAGAAGAGCACAGTGCTTCCCTACGGCAGGAGGTTATACAACTCACGGCAGCCCTCAAGAAAGTTGAGACACTGGTGCAGACGCAGAGAgccagtcacacagagacagcatCCGCGCTATCTGAGCAGCTGAGAAACACACAGAAGGACctgcgggagagagagcgagaaagaaagGAGACTGAAAGGGAGCGACagaaggagagggaagagagagaccgGGAGCAGAGGAAAGTCAGAGAGAGCCTGGAAAATAGAGACCAGCTCATACAGCAAGTTCTCTTGGACTCTGAGCAGCGAGACCAAATGCTTACAGAACTGCAAGAGAATATCCTGACCAAAACAGAGCCTCACACTGCCCTGAAGCACACCCTCTCGGGGAAAGATCGCGACAATGTCCCTAATGCACATACGAGGGACAAGGTCAGACCAGTGTCTACAGGGACTACGCGCTACACTCTAGCCTCTGCCCCATTTGTTGCCCCCTTTCCACCACCCTGTTTGAGAGAGCAATGTGCAGAGGTCAGCGTGAGGGTTGCTGGGGAATACATGCGTGATGTtagaggggtggaggggcagTTGCGCAGTCAGGCTGTTCGAGTGGGGCAGGAAAGCATAaagctggagagggagagagggtatTTGGAGAGGATGCTGAGATCCCTAAGGAAAGACTTGCTGGTGAACAAAAAAAGTGTGGAGGAGCGGACACTGAGACCGCTTACCACTGAGACGGGCAGAGATGGTGCAGACATTCTGCTGGATTGTGAGAAGAAGGAGCTGTCTGAGCTGAAGACTCAGACGGAGAGTACACTGAGAGATGTGCTCACACAGCTACAGGCCCTCAGTCAGTGCAGTAAGCTGTTATTAGAGTGTGCCAGTGAGAGATCCCGAGTTTTGGATCTTCTCCCACACAGTGGATATCACTCAGCTGGAGGTCGCTGCACCCCTTCCCAAGTTACCATGAAACCCAACCCCACAGGGCCCTACACCCCAGAATGTAAGCAGGCAATGGAATCCTCAAGCTTGGCTCTGAACCAATCACAGCTGCTCAGGCAGCAGATTCGACATCTGTTAGGTGAGGCAATTGCCCGCCAAAAATCAGTCCACCAATCAGTGAACGAAGGCCTGGTGAAGAAAATAGCTGAGACAGTCAGCCTGAAGCAACACCTTACAGTGAGCTCAGCCTCAGCCAGGCAGGCAATTTACCGCAAGCAGAGACAACTGAACTGCATTCAGCACAGCCATGACAGAGCAGTGGGCCCAGTGTCCAGTGCAGATCTGTTATCCAGAGAGAGACTGGACAGGCCAATAGTGCAGGTTTACCACCGACATCCTGGCACTCAGTTACCAGAAGCTATGCACCTCATACAGggTAGCGCTGTGGTGCAGCAATGTCTGCTGTCCTCGGGTGGAGAACTGGCTCAGCTGTGTGGCACTCGACTGCAGTTGACGGAAGACCTGCGAGGGAAGGGGGCAGCGGCCCAGGTGGACTCTGCCATTAGCCGTACACACGACGAAATGACTGACTGGGAGCCTACCCCCGCTGTTGCGGAGTCTCCAGAGATCAAACTCTTTGGGAAGTGGAGCACTGATGATGTGCAAATCAATGACATCTCTCTGCAGGACTACATTGCTGTAAAAGAGAAGTACGCCAAGTACCTTCCACACTCTGGGGGCCGCTATGCTGCCAAGCGTTTCCGCAAGGCGCAGTGCCCCATCGTGGAACGCCTCACCAACTCAATGATGATGCATGGTCGCAACAATGGCAAGAAATTGATGACTGTACGCATTGTGAAGCACTCCTTTGAAATCATTCACCTGCTCACAGGAGAGAATCCCCTTCAGGTTCTGGTCAATGCCATCATCAACGGTGGACCCCGTGAGGACTCAACCCGTATTGGACGTGCTGGAACCGTGAGGAGACAGGCTGTGGATGTCTCACCTCTACGTAGAGTCAACCAGGCTATTTGGCTGCTGTGTACAGGAGCCAGAGAAGCTGCCTTCAGGAACATAAAAACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCAGCCAAGGGTTCATCCAACTCGTACGCCATTAAGAAGAAAGATGAGTTGGAGAGAGTGGCAAAGTCCAACCtCCCTCTGTTTTGTTTCACCTGTGTGTTTCCTACCATCTCTCCATTGGACTGCATCAAGTACCCGCAGAGGTGCCCTCCGGGCCAGCTCTGTCTCTCAAGCACAGCAGTCGGCACACGAGGAGATTTCCGTGTGGTCATGTATGAGAAAAGCTGTGttctctcctctttgtgtggTCTCACTGGAGAGAAATACACCATGGGCTTAAACTTCACCTTCACCAATGAGTGCTGCGACACTAACCTGTGCAACGGGGCCACTGCAGCCACTGCTTCCTATTCGGGGTCCACTACACTCATTCTCCTCTCATTTGCTCTTGTACCCTGGTGATTGATTCAGGACACACCGTGCCTTAGACAAGAGACTCCACCCACAGATACACTGCATAGAAATATAAACATTTgcttatgaaaatgtatttttaaataacttaaTAATAACATTAGATGAGCAGTCATGGGCCCATAAAGAAAACCACAAAGATTTGAATTTCGCACTCACACAACTAGATTGCATTTACATGGATCAAGAGGGCCTTAATTTAAGAGGTTTTGCAGAGTAATTCAATGCCAGAAACCTGTTATTTTATGGTGGTTTATAGAGCACCTAGGGCCCTTCTCTGTAAATGAATCAGTGGTTAATTCttagttattatttttaattaatttctaaATTAAACTTGaaaaccattttaaatattttggagaacaagtatatatgtatttgaaaataaccGCCAGTGGAAATGCTTACTGTCCATATAATGACATACCAAGAACAAACATATTTCTTATGTTAATGGCCCTTACAAGACTTATTTATaagtatttgttattttatgtttaacCAAACACTTTCACATAGAACAACACTTGGTGTTGTTGAAGGTGGCCTACATGATTTAGGAGTGATGTCATTCATCACAATTTGACTGGGCCACTACTTCAATTACAGTTATATCCAATTATAACTGGCGATATTGAGTCAACATAAGTGGTATCTAATCACACAGGAGATGACGTGCCTTAAAATACAGTTTATTCAAAGTAAAAATCCATCTTAGTACTATATTCCAATATTGCCAAATGCCtgcaaaaacacatacatttcaaaagtgacataaaacataaaacatgaatGTAACTTAAACCTTCATTTGAATGTTAATTCAATGTAATGTTTGCATGTAACATCTTCCCCCTGTTCAAATTGAGAACTAACAAGATTTTCACTCTTTTTCAATAGCCCTTCTTTTTTGCGTTATTAAAATTCCAACGTATCCACATTAACTGTGTATCAAATCATGTGGCAAAGAGTAATAAACTATCTCAAACCAGTCATTATCGTTTAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00021	UPAR_LY6	u-PAR/Ly-6 domain	Domain	Interproscan
PF00177	Ribosomal_S7	Ribosomal protein S7p/S5e	Domain	Interproscan
PF03148	Tektin	Tektin family	Family	Interproscan
PF18615	SMYLE_N	Short myomegalin-like EB1 binding proteins, N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000235	Family	Small ribosomal subunit protein uS7	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR005716	Family	Ribosomal protein uS7, eukaryotic/archaeal	Interproscan
IPR016054	Domain	Ly-6 antigen/uPA receptor-like	Interproscan
IPR020606	Conserved_site	Small ribosomal subunit protein uS7, conserved site	Interproscan
IPR023798	Domain	Small ribosomal subunit protein uS7 domain	Interproscan
IPR036823	Homologous_superfamily	Small ribosomal subunit protein uS7 domain superfamily	Interproscan
IPR040947	Domain	Short myomegalin-like EB1 binding protein, N-terminal	Interproscan
IPR045860	Homologous_superfamily	Snake toxin-like superfamily	Interproscan
IPR048256	Family	Tektin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11205	RIBOSOMAL PROTEIN S7	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000028	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0015935	Cellular Component	small ribosomal subunit	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-