Gene detail

Detailed information of Hgig_26486 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_26486	CALSYNTENIN	Chromosome30	19257711	19541139	-

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_26486

ACTCAAAATGTGCGGAATGGCCACATTATGGGGGAAATATTTAGAGATGCCCCTCGGTTTGAGTTGTTGCACCCGTCATCTGGCTACCACGGCCTGGTTTCGGAGGACAATCTTGTGGTGGACGTCCTGCCTCAGATCAGCGCCCAGCCTGATGTCTGTGCCTTCAACATCGTCGCTCACCACACACGCTCTGAGATCCCGTTCATGATCCGCGTGAAGGATGCTATGGCCGGTACCGCGGAGCTGGTTGCCACAAGAGAGCTCAACTGTGAACAGCGCAAGAACTATCACTTCGACATCGCTGCACGGTCTTGCTCGGGCCTCCTCAGCAACAATGTGACCGTCCACGTAAAGGTGGGAGACGTTAACGAGTTCGCCCCGGTGTTCTCCGAGCCTTCATACGTGGTCTCCGTAGATGAAGGGCGTCTCTACCAGGAGTTGGTCGCTCTTCAGGCCCATGACAATGACTGCTCCCCCAAATACGGAGATATTTGCCGCTATGAGCTCCTCACGCAGGATCAGCCGTTCAGCATCGACAGCGAAGGCGTTGTGAGCAACACTGAGCCTCTGGACTTCGAACGCTCCCATAACCACATCCTGAGCGTCGTGGCCTACGACTGTGGGATGAAGAGGTCGCAACCAGTCATGCTAACTGTTAAGGTCAACAGGGTCTGCCATCTCGGCTGGAAAGGTATCCCCTCTCAAGTGGAGTACTGGCCAGGATCAGGTCGGCAGGAATTGTTCCCCCAGGCTACGCTGGAGCTGTGCAGTGTGCCCTGTGAGGTGCAGGAGGTCCACGCACGAGTCACACTATCCACTCAGCACATCGGGCGTGGTTGTGATAGGGACACCTACTCCGTTGCACAGCAGAGGAAGATATGCGGAGCGAACACTGACTCGGTGGACCTCCTTCCAGCGCCCGGGCCGGAGCACAGCTGGACGGCCGGTCTGCACAGTGACGACGGGGCAGTGCCAGCTGGTGTTGGTATCAACGGCGGTGGATCAGCCGGGGAAGGTACTGGCGAGGGTACAGGCGAAGGTAGCAACGGAGATGTGATATACGAGTTTGATGGTGATGGCGTGGTGGTGCCCCAGTCTGTTCTCACCCATAACCTCACGAATACGTTCACCGTCAGTACCTGGATGAAGCACGGACACGCTAAGCAGGATGATAAGCACACGAAGGAGCACTTGCTGTGCCTGGCTGACGACCACCAGATGAACCGTCACCACGTGGCCGTGTTCGTGCGCAACTGCCGCCTCATCCTCCTTGTGAGGCACGAGTCTACTGACGGAGGTCTCAACACGTTCCAGCCAGCTGAGTGGCGCTGGAAGCTACCGCAGGTTTGTGATGACGAGTGGCATCATTACAGCGTGCAGGCGAACCTCCCGGAGGTGACACTCTTCGTTGACGGACACACCTTCCATCCTGAGACGGGGGACTCTCCTGAGGTGTTGGATGACTGGCCCCTGCACCCCACCAAGGGCATCAACACCACCCTGGCAGTGGGCGGATGCTGGCAGGGATCGGAAGGTCGAATGCAACACGGGTTCACCGGATCGCTAGCGGGACTCAACGTGTTGGTCGGGTCCCTGGAGCCTGTCAGGGTGCTGAGCTGCCTCACCCGGTGCCAAGAAGCCTTGGATACCCCGGCCATGGAGCTGCTACAACCATCCATGGAGCTGCTTACCAATAATGAGATGACCCAGATCAGCATAGAAGGAGACAACATCACGAACCTGGAGACGCTCCTCAGGAGGGTGGCGTACATCAACTCTCGAGATCTTCCAACACCTGGACGACGACCCCTGGACATCCATACCAACATACTTTGCGGTTCGGGCAACGGTCTGCGCATAGCCTCTGTGTCGTCCCAGATTGTGGTGATGCCGCCCCACCAGCCAGCCATCATCATCAACGGCACGGCCAACTTCGCCCAGGAGTATCAGAGCTTCAGGGCCGGACTCAGAATATTCCCTGACGTCACCGTCACTCTTGCGCAGCAGATGCTAGAGGAAGGTTATTTTGTAGGTAGAAGCAGCGAGGTGTCGGAATGCGCTGTATCCGTGTATCCTCCCTTGAACCCCGACCACGAGACTTTGTCCCTACCGGACAGCCTTATCAGGGATTTGGGTCTAACCTCCACCGTCTCGAGGCAGGGCACCACCATCGCCGGCCCTCACACTGCTGCCAGATACACGGCCATCCTTCGTCAGCTTCACTACGCCAACAGGAAGCCCGCCTACTACCTCAACCGGGCCTTCAAGCTCACCTGCTCGCAACTAGGAGGCAGGTTCACCAGCAACGAGTACCAGCAGACGGTAACGGTGATCCACCCGCAACTAAGCATGGACCGCAGCAGCGGCGGCGGAGGTGGTTCTTCTTCAGCCGATGACTCTGAGCAGACACTACTGGAGGAGGAGGATGAAGGAGACACCATGGGGCACCAGGCAACTCTGGATGACCTGGCCGATGCTGGAGATGCTGCTGAAGACAACACTGTGCTGGAGACTATGCACTCCAATATTGATCCACTAAGACTATATGCCTCCGCCACCCCCCACCACAGGGCTGCTGTCACCGCCACGAGGGGCCGCCAGGCCGCAGCACGGGCCGCACACGCAAGGGTGTCTGGTCATCACGTGGACATGCGCGCAGACGGCTACTACACCGCCACAGACGTGGAGGGGGTCCATGCCGCCGGTGCAGGTCACGCGGTGACTGTGATCGTGGTGGTGTGCGTCGGGTTCCTGCTATGCCTCGTGGTTCTGGGTGTCATCAGGCTGAGGGCCGCCCATTCCCGCCACGCGGGGGCAGCACCAGCGCCTTCTGATCACACTGCTGACGCGGAGATGGCCTGGGACGACTCTCCCCTCAACATCACTCTCAATCCCATGGAGCAAATGGAGATCACAAAGTCGACGGCCGGGCACAAAACCCGCAGCAGCAGCGTCGGCACCCGTAACGAGTCCTCCTCTGATGACGAAGCCAGCAGCAACTTCGCAGACGATATGGACGACTCGACAGACGAAGAGCAAGACGAGGTAGAAGTTGATGACTCTGCGGCCAAGAGGAAGGAGCTGGAATGGGACGACTCGACCCTTAAAATG

Transcript

Hgig_26486

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF19699	CLSTN_C	Calsyntenin C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001791	Domain	Laminin G domain	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR045588	Domain	Calsyntenin, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14139	CALSYNTENIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0009986	Cellular Component	cell surface	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0045211	Cellular Component	postsynaptic membrane	Interproscan
GO:0050806	Biological Process	positive regulation of synaptic transmission	Interproscan
GO:0051965	Biological Process	positive regulation of synapse assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-