Gene detail

Detailed information of Hgig_19397 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_19397	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Chromosome20	112442892	112630899	-

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_19397

ATCTCTCCAGTCACAGACATGAATTCTGTGGGAAGTAATGGTTGGTGGAATGAAATTCTTAGGGAATTGTATGATGGGTGTGTGGTTATATATACTGATGGGTCAAGAAGTGAGGAGGGAGAAGTGTCAGCCGGAATGTATGTACCAGAGCTCAAGTTAGCCACAGGGTGGAAGCTCAATCCTCAGCATACAGTACTGGGAGCAGAATTGTTTGCCATATCTCAAGCAGTAACCTTCGCTAATACAAATAGTAATTTAAAAAATAGAGACGTAGTGGTGGCCACAGACTCAAGATCAGCACTTGACATTATCAAAAATACATATAGGCCGAGTTACAAATATATTGCTTACCAGATACAAGAACAATTAATAATGGGACGCCTTGGTAGAATAAAGTTACAATGGGTTAAGGCACACTGTGGGATTAAGGGAAATGAGACAGCAGATAGAGTAGCAAATTGCATTCCACACCAAAAAGGGTACGAAGGTATCCGTGTGGTGTATGTGGAAGAGGTGTTGGACTATATCATATGTGACTGGTGGTTTTACAGAGATTGGTTAATTTACTTCGCTTCACTTCTGTTCTGCCGCACCCTGTACTTATCTTCACTGCTTCCAAAAGATGCTCTTCACTGCTTCCAAAGCATTGACTCTTCTTCTGACACCCCTACAGCTAACACAGCCCCAGGTACATCTGAGTGTTTTAAAGAACTTCCATGTCGCATTGCATATCCAAGGTGTGTCAGAAATCTTATATGGCACTGCATTAGTAGCAGACGAAAAGTGAAACACGTGGTTCAAGAAGAAGAGGAGATGAGCAGGGTAGTTTCAGGAAGCCTCAATTCTCCATTTGACTCGGTTCAGCCCAGAAAACTGAAACGTGTAAAAGCGAAGACTGAAATCAATCCCGTTGTTCTTAAGTGTAAAGAGATTCTCCACTCCCTAGCACCGAAACGTGAGACTGGAAAAGTGGAATATGCGTATAAAACCAAGTTTGGAACCATAAGATTTGACAGCGATAATTTGCTGTCCCGCAATGTGGTATCATTGAAATCTAGCAGTGAGCATTATAGTGACATTGACATTCAGTATTTTGGCGAAGCATTGAATAAAACATATCAATCTGGTAGTTTCAGTGACGCCAGTGCAGTAGCTGCAACTGATAGTGTTGCTGTCGGACACACTGATGCTGATAACCAAGACTATTTTATTGACAGACAGTTCTTTGGATCTGCATTAGATAGAGATATTAAAAAAGAGCAAGAATTGGGCCAGCAAAGCGCCACAACTGATCCATATTTTGTGCATAGCAGGCAAGATATTAATAAGGAAACCGATCTAAACTATATTGATGAGCTTTTCTTCAAGGACGTTGACGCACCTGAGAATGCCATCAATGAGAAAGGAACGCTTGCGATGGAGCCATCAGAATGCAAGAGTGACTTCGAAAGAGCTCTTCTTGATATGGATGATGAGTCTTGCGTCTACAGCCCTGACCCTAACATGGAGTTGACGCCACGTGCTACGACGTTGGAGCATGACATTGCTGAGTTTTTCGACCAAAAGAGCAGCAAAGCAACGAAAACAGGACTTCCCTCAAGTCCAGTGCTTGAGGAGCAGCTGAAGCAACAGGAACAAGCCACAGAACAGGAAGCGTTGCCTTCTGAAGAGCAGCCTGCAAACACAATAAGCACTGCGGGAAGTCTACTAAAACTGTACACGACGAAAACACAAGAAAATAACGGAGAAGTAAAGAAGGAAGGAAGTGCCTACGATTACGTTCTTCAGCTTCGATGGAAGGAAAAGGAAGAGAAGTTGTCCGAGACTGGAAAGGATGGGGAGCTGTTTTTGCCCAAGTACAAAAGAATCATCAGTAGTGTTTGGAGCGTGAGGAACCGCTCCAGGGCAGAGATGAAAATCCATCTTAAGCACTACATAATCTACAATGATAACGACATAGTTGGTATCTTCAAACCCTACGGTCTTCGTGTCCACGGTGGAGGCGATGAAGAGCAAAAGTATCATTCCTGGTCCCTCATGGAGCTCCTGCCAGAGCTGTGCGAGCTGACGGGGGCTACCGAGCTGCACCACGTGCACAGGCTCGACATGAACACTACAGGGCTAATGTTGTTGGCAAAATCCCATGCGTCGGCGACGAAACTTCGCCGGATGTTCAAGGAACACACGCTCATCAAGACCTACTTGGCGATAACCAAGTGTGTGCCTAGCATCCTCACTGGTGTGATTGACATCCCACTGAAGGAGTCCATCGTAGAAAACAAGAGGAGGATGGGACTAAGACCAGTCATTCATGATCTAAACCAGCGCAATCAAGGTGGCGCGAAGGCTGTCACCAAGTTCAAGGTGCTGAGCAGTTGCGACAGCGCAGCACTGCTGAGCATTCAGCCGCAGACGGGCGTGAAACATCAGATCCGGGCACACCTCGGGCTGGCCCTCAACTGTCCCATCCTCGCCGACCATAAATACTCCAGCAACACCAGGATGGTGCCACAGAAGTTACCATCTGACCTGCTGTATCGACTGCAGATACGTCAGTCCAAAGTTCGTGACCTGCCCATCATGCTGCACGCCTCCAGCATCTTCTTACCGCAGTTTGGTGCTGATTCTTCTAACATAAAGATCAGCTGTCCGCCGCCCCCTCACTTCACCAAGACGATGAAGGCCTTGCAGCTGAGCGACGTACGCAACCGCACCAACCTCATGTCTTTAGATTTCGTTGACATTGCTGGGGACCAGTCG

Transcript

Hgig_19397

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR006224	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050188	Family	RluA Pseudouridine Synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000455	Biological Process	enzyme-directed rRNA pseudouridine synthesis	Interproscan
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-