Gene detail

Detailed information of Hgig_02997 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_02997	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	Chromosome3	90484947	90572163	-

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_02997

ATGATGCTTCGCTTGAGCCGTAGCAGTAACCTGGTGGCCGTGTCACCCAGCATCCAGCAGCGGGCTAACATGAAAGCGCCAGAATGGCTCGCACTCACCATGGAACCTCACTCAAAGTTGTACACTGATCCTGTAGCGGTGCTGGACTTCCAGAGCCTCTACCCAAGCATCATGATCGCGCACAACTATTGTTACTCCACGTGTCTGGGACGTGTAGAGCTCCTGACGGGACCCCAGCCGTTCGTACTCGGGACTGGCATGATGAAGGTCTCCAAGGAGGAGTTGATGGACATGGTGGATGAGTTGCACGTATCACCGTGTGGGGCTGCGTTCGTGCCCACCAGGGTGCGCAGAGGAGTTCTTCCTTGCATGCTGGAGGAGATACTCAACACCAGGATCATGGTGAAGCAGAGCATGAAACTTCACAAGGAGGACCCGACGCTGCAGAAGGTGCTCCACTCTCGCCAGTTGGGCCTCAAATTGATCGCCAACGTCACCTATGGTTACACGAGCGCGAACTTCTCCGGCAGGATGCCTTGCGTAGAGGTTGGTGACAGTGTCGTGAGTAAAGGAAGAGAGACACTGGAGCGAGCCATCAAACTGGTCAACAACCACCCAGACTGGGGAGGGAAAGTCGTCTATGGGGACACTGACTCCATGTTTGTGCATTTTCCTGGAAAAAGCAAAGACGAAGCCTTCGAAATTGGCCAGCAGATCGCCGATGTCGTCACTCAGATGAACCCCAAGCCTATTAAATTAAAGTTTGAGAAGGTCTACATGCCATGTATTTTGCAGACGAAAAAGCGTTACGTTGGCCTCATGTACGAGACCCGGGACCAGAAGGAACCCGAGTTTGAAGCAAAGGGCATCGAAACTGTCCGGCGCGACGGGTGTCCCTTCGCTGTACAGGTGTTAGACCAAAGTCTACGGCTGTTGTTTAATCGACTGGACGTGTCACTTGTTCGTCGGTACGTCAGTCGGCAGTTGGCCGCCCTTATGGGAGGACGTGTGTCGATCCAGGACCTCACATTCGCCAGGGAATACAGGGGGGTTCGAGGGTACCGGCCAGGGGCTTGCGTTCCTGCGCTCTCCCTTGCCAGGCAACGCCTTCAGAAGGACCCCCGATCAGAGCCTCTGTCTGGGGAACGCGTCCCCTACGTCATCGTCTATGGGGCCCCGGGACTACCACTCATCAGACTCGTAAGGTGCCCGTCTGAACTGCTGTCAGACACGGGTTTGAATCTCCGTCCTAACTACATCTACTACGCCACCAAAGCCGTCCTGCCAGCTCTCAACAGGTGCTTCTGTCTCCTCGGTGTTGATGTCATGTCCTGGTACCACAAACTGCCCCGTCCCAGCACTCTACAATCTTACATGGCTATTCCTCTTGCCGTTTCCAAGTCCACACGCTACCCTGGAGGCGTTTTCCCTCCTACAGGAGCAACAGAAGGTGCTCCTTCAATACTCGTCTCTAAGGGCGGCATGTCCACTATTTCACAGTACTTCAGTTCCTCGTCGTGTGTTTTGTGCGGTGCTAACACTATTGTTAAGACCACGAGGAACAAAAACATTACAGTTGTAGATGCTAGAGGAGCAGGGGGCTTTCCTTCTAAAAGTGCTACAATTGCTCACGATTCGGCTGGTGTTGATGTCACAACTAGTGCTATTGGATCAACTAGTACTGAAGACACGACTATTCCGAAAGAATCAACTAGTACAGAAGGCGTAACAAGTATCATGGCATCAACTGGTGCTGCAGGATCAACAAAAGTTAGTACGAAAGTCAGAGGTAGTGCATCAACAATTGCCGACGACGTAACTGGTTTTGCTGGATCCACTAGATCTAGAATCGCTGACACGAGTAGCAGCGGACGGACAATCTGTAGCAAGTGCAGAAGCAACCCACAAGCGTGCGTATTGGCGCTCAATGACAGAGTGAGGGTCGCGGAGAGAGTCATGGAACAGATTAACAAGATTTGTCGTGCTTGTACCGGGGACCCACAACACCAACAGAGGAACCATGGAGGGGCGTGTGTGTCCTTGGTGTGCCCCATCAACTACAGTAGGTCCTCCGCCAGTAGGAGACTAACGGCTTGCTACAACCTGCATTCTCTTTCCGACTCCTTCCCTGACAGTTCATAG

Transcript

Hgig_02997

CAGTTCCGAGTGGAGTCGATGATGCTTCGCTTGAGCCGTAGCAGTAACCTGGTGGCCGTGTCACCCAGCATCCAGCAGCGGGCTAACATGAAAGCGCCAGAATGGCTCGCACTCACCATGGAACCTCACTCAAAGTTGTACACTGATCCTGTAGCGGTGCTGGACTTCCAGAGCCTCTACCCAAGCATCATGATCGCGCACAACTATTGTTACTCCACGTGTCTGGGACGTGTAGAGCTCCTGACGGGACCCCAGCCGTTCGTACTCGGGACTGGCATGATGAAGGTCTCCAAGGAGGAGTTGATGGACATGGTGGATGAGTTGCACGTATCACCGTGTGGGGCTGCGTTCGTGCCCACCAGGGTGCGCAGAGGAGTTCTTCCTTGCATGCTGGAGGAGATACTCAACACCAGGATCATGGTGAAGCAGAGCATGAAACTTCACAAGGAGGACCCGACGCTGCAGAAGGTGCTCCACTCTCGCCAGTTGGGCCTCAAATTGATCGCCAACGTCACCTATGGTTACACGAGCGCGAACTTCTCCGGCAGGATGCCTTGCGTAGAGGTTGGTGACAGTGTCGTGAGTAAAGGAAGAGAGACACTGGAGCGAGCCATCAAACTGGTCAACAACCACCCAGACTGGGGAGGGAAAGTCGTCTATGGGGACACTGACTCCATGTTTGTGCATTTTCCTGGAAAAAGCAAAGACGAAGCCTTCGAAATTGGCCAGCAGATCGCCGATGTCGTCACTCAGATGAACCCCAAGCCTATTAAATTAAAGTTTGAGAAGGTCTACATGCCATGTATTTTGCAGACGAAAAAGCGTTACGTTGGCCTCATGTACGAGACCCGGGACCAGAAGGAACCCGAGTTTGAAGCAAAGGGCATCGAAACTGTCCGGCGCGACGGGTGTCCCTTCGCTGTACAGGTGTTAGACCAAAGTCTACGGCTGTTGTTTAATCGACTGGACGTGTCACTTGTTCGTCGGTACGTCAGTCGGCAGTTGGCCGCCCTTATGGGAGGACGTGTGTCGATCCAGGACCTCACATTCGCCAGGGAATACAGGGGGGTTCGAGGGTACCGGCCAGGGGCTTGCGTTCCTGCGCTCTCCCTTGCCAGGCAACGCCTTCAGAAGGACCCCCGATCAGAGCCTCTGTCTGGGGAACGCGTCCCCTACGTCATCGTCTATGGGGCCCCGGGACTACCACTCATCAGACTCGTAAGGTGCCCGTCTGAACTGCTGTCAGACACGGGTTTGAATCTCCGTCCTAACTACATCTACTACGCCACCAAAGCCGTCCTGCCAGCTCTCAACAGGTGCTTCTGTCTCCTCGGTGTTGATGTCATGTCCTGGTACCACAAACTGCCCCGTCCCAGCACTCTACAATCTTACATGGCTATTCCTCTTGCCGTTTCCAAGTCCACACGCTACCCTGGAGGCGTTTTCCCTCCTACAGGAGCAACAGAAGGTGCTCCTTCAATACTCGTCTCTAAGGGCGGCATGTCCACTATTTCACAGTACTTCAGTTCCTCGTCGTGTGTTTTGTGCGGTGCTAACACTATTGTTAAGACCACGAGGAACAAAAACATTACAGTTGTAGATGCTAGAGGAGCAGGGGGCTTTCCTTCTAAAAGTGCTACAATTGCTCACGATTCGGCTGGTGTTGATGTCACAACTAGTGCTATTGGATCAACTAGTACTGAAGACACGACTATTCCGAAAGAATCAACTAGTACAGAAGGCGTAACAAGTATCATGGCATCAACTGGTGCTGCAGGATCAACAAAAGTTAGTACGAAAGTCAGAGGTAGTGCATCAACAATTGCCGACGACGTAACTGGTTTTGCTGGATCCACTAGATCTAGAATCGCTGACACGAGTAGCAGCGGACGGACAATCTGTAGCAAGTGCAGAAGCAACCCACAAGCGTGCGTATTGGCGCTCAATGACAGAGTGAGGGTCGCGGAGAGAGTCATGGAACAGATTAACAAGATTTGTCGTGCTTGTACCGGGGACCCACAACACCAACAGAGGAACCATGGAGGGGCGTGTGTGTCCTTGGTGTGCCCCATCAACTACAGTAGGTCCTCCGCCAGTAGGAGACTAACGGCTTGCTACAACCTGCATTCTCTTTCCGACTCCTTCCCTGACAGTTCATAGAGGGTGTATTAAACAACAGTGAAATATTCATAATTCGACTATATCCATATATTTGCGAGATCTAAATCACGATAAATTGTCTGAGAAACGCTAAGATGAAGTAGCTTTCGAGACTTTTTCAAAGAATCTGGTGTCATATACATATGTGTTAAAATACACGATAAACGAATTCTAAACCTGAATTGTAAACCTCCTTTAACGAAATTAATTGTAAACTTCTGAATTGAAGCGGCCTTTACTAACAACTTAGGTGACCACCATAGAAGGTCGGCTTGTACCTATGACCAACATAGTATGTCGTCTCGTACTTATGATGTTGTTGTTGTTGTTGTTGTGTAACTACCAATGTGGCTGTCCACACACATCCTTATCATTTCCAGAAGTCCATCCTTCCCTGCCCCTGGTCTTGCTTTTTGGCTCATCGATGCTTCTGTTAACGTCACGCAGTCATTGAAGCAGAACGATACTGGACCTCTTGGATTACTACGGTTTCAGCAACCCTCCTTCAAAAACCATGGTCGAGGGTGCGTCTACCTTACAGGGAGGGATATAAAGGGTATCCATAAATTATCTGTACAACTTTGACAATTTATTAAAACAAATATCGAGATAATTGTACGAGGTTTGTTGCAGAACATGAGAAACTAATAGTTTTTTTTATACGTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF14260	zf-C4pol	C4-type zinc-finger of DNA polymerase delta	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006134	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR006172	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR017964	Conserved_site	DNA-directed DNA polymerase, family B, conserved site	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR025687	Domain	C4-type zinc-finger of DNA polymerase delta	Interproscan
IPR030559	Family	DNA polymerase zeta catalytic subunit	Interproscan
IPR042087	Homologous_superfamily	DNA polymerase family B, thumb domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45812	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016035	Cellular Component	zeta DNA polymerase complex	Interproscan
GO:0019985	Biological Process	translesion synthesis	Interproscan
GO:0042276	Biological Process	error-prone translesion synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-