Gene detail

Detailed information of HK74SY85_g8774 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg58:1627023...1630656
NR annotation: XP_020892893.1, mediator of RNA polymerase II transcription subunit 4 isoform X1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HK74SY85_g8774

ATGGCGGCTCAGTCACATCAAAGAACAACGAAAGACATTGTCAACGAGATATTAGATGATTACGAGAAACTTACACGGTAAGACCCAGGTTTTGAGTCTAATGTTTTCATGCTTGATGTGTATGAGCTGTTAAATCGTGAATTTTCTACATCTATGTGTAAAAACAGTGTCGAAAGTGGGAATGTTATGTGAGATGCCCGGGTATGATGTTGTTCCCGTTGTTCTTGTAGGCAATTATTTGAAAGTCTGTCTGCGACATCGCTGTATCGTGGAGCCAAGAGCGATGCTTCTGCAGAGGATGCAGCTAAGGTAAACTTTGTTTTCATCGGGCTACATCATCAATTTGAACAATTAGGTTATATTTTACTGGAAGATCTCTCCCCACCCCTCGCGTTCCCTTAATTTCGTCGTGTGCTGTCAGGTTTTGAGTTAAAACCATCTGTTGTGACCTATTTATTTGTAGTTTGTGAATCAACTAACTGAAAAGGATAAAGAACTCCAAGCAGCAATAAAAATTGGTAAAATTTCCATTCATCACTCTCTGTGCAAGCtttctttcattctatttccatttctttcatttcCCACTGTAGAAATACCTGCCTATGTATTGGTCTGCCTACCTTTTCACCTCTTGATTTGTCTGCCTGTTTGTCTGTCTAATAAATTATTATCTCCTTGAACTTGATCTGATAAACATCTGATAATGACATCTGACGAAGTGGAAACGTGGTTCCTTAATATCGCTTAAATTATTGCTAATGGTACTAATTTAATCATTTAGAGATTTAAACTTCAATTTCATTTACAGCCAAAGAGCAAATGGAATGTCAGAAACTAATTCAAGAAACCAAAGACAATATTTACAAAAAAGATCAGGAAATATTGAAACTTGAAAATAATTTAAAGGAAGCAGAACAAATATTAGTAAGAGCATCAATGATGGTTACAATGTACAGAATCCTAgaaggcgtccatacaattagtaatgtatatcatctctgatcaaaatccaacttctcctttggaattcaatgagcctagaggagaacttagaatttgatccgagatcaGGatggttgaaaggaaatttgtaaaattttgtaaaaatagtgatttactttacaatgtttcgagccttagccctttgtcggaggaacagctaaggctcgaaacatcagtaaagtacatataccgtaagtcactatttttacacagtgttacaaatttcctttcaaccatccttatataattatcacacaccaatgcagtccatactagtttactcactagtttccatATGATCCAAGATCACTTACATCTGCCTGGACCCCTGCAATAGGCTATATTCACAATAGGCACCATGATGATTCCTATATACAAATCAGTCGCATGGTTTCTGAAAGGAAAAACAACTTTAAATCATCAGTTATGTggttcgttctctcccttgcttcaagggtttttctccggaactccagttttcctccctcactaaaaacgaactagtgagttgagagttgtgtgcttagaatattagaatgtagttttttttattttttattttttatttttttAaatattagaatgtagtggtagtgaatgtgagagatagcaggcccacatcagcctcctggctgccataaatcagcctgctttgaacaacaaataaaagatttattgTTATTTTTATTTCAACTATTTTCTTAATAATACATTGAACGTTTACCATTATAACCATCATTATTATCTATTAACGTTTTTGTGATAAATCAAACATCTTGTATATTTAGTCACAAGCATTATTCCAAGCAAAAAAGAAGCTATCAGCAATCGAACAAGCAAATAAAGGTGACttattattacaatattattaattgttattaattgttatgatgttgttctcatgatataatattaATGCTTTGCATTTTGTTGCTGTGGCGGTAGTGGTGGTTGTTTGTCATAAATAATATTGATGTTTTCTGGTTTACACATGCATATCAATTAAATATTGTTCCTTTTCTAGGATCTGTGTCGTCTGAAGAGCTCATCAAATATGCTCACAAAATAAGCAGTAGTAATGCAGTGGAAGCACCAACAACATGGTTGCCAGGTAGATTAGATAAGCAGTATACATAAATGTTAATTATAAAATTCATTTAATATTGATTGCTATACTTGTCAGTGGTTCTCAATTGTATAGATACATACAGATAGATATGGTCTGTAGTTTACTAAAGATGGCCTTGTCCTGTATCACTAATGcagcagactccctgtagagcagacacccccagcacctgagctcttactatccaccttaaagaggtgtttgccttagaAGTGTGTCTGGTTTGAGGGTATCAATAATTTTCATTAATTCCATGGTTACAGGTGATCCCAGACGACCTTACCCTTTAGACATTGAGATGAGATCAGGATTGCTTGGATCTGGGTTTGGTGAAGGAGCAAGTACCAGTGGTGATGGTTTAGCTACTGGAGCAGAGAATACAGCATCTTCTTTAGCTTTGCCATTACCAACTAATGGTAGGACTTGAGAAAGAATTCAGATAAAGTTGTAAACATAACGCTGTAGGGTTGTTAGGGGTTCGGTGTTtactggatttgtgtcctgtcaatgtctgcatttacaatcatgaggaaaagggctGTTGCTATAGAATAATGATACTTACCTAAAACAAAGTTACCACCCTTGGGGATACAAAAAGTAGTCATAAATGGTACTACAGTCCAACCTCTACTAAACACCCACAGTTGGTGAATGgacacaatatttaacaataattattattcgccgaaggcaaagtgattatcggtgaatatttactgagatgaagacaaggtaaatattcaccataatcactgagcctgaggcgaataattgttttagtatcattacacaggtgattatttgaaagaaaatagacaacatcaatttatttctaaatgattgttttgaaagcggcacgcatcaacaaacgaagcgcgcgcaatactatattcaccgtaggtgattatctagaaataatctgaagttatcaaccaatcagcgcacgcgactttctataatcaactgtgtaatgttactaaTACTGCATATTAATCAGTTAAAAATGGTTTTGTGAGGGTGGTCACTGAGGGGAGATATGGTCACTTATGACGGCTGTCACAAGACAATATTCTACTGTACTAAATGACGATTATTTTATGATATCAGATGGTGTTACAAATGGTCAGTCATCAGTGGGGCTATCTTGGCAGTCGCATCTACATGGACTCCCCACTACAACTGAAGTAAGTGTTCTCTTGTGGCAAATAAAAGCAGGTCTTTTTAGAGGAGAATtaccctcctcgacaggcaactccttacttttgggcttcctgtggtaagaaggagattctaccacaggaagcccaattatggagtagcctgtggaggaggctaGAGGAGAATGGTGTTAATGGTGTTTTTTTTGTATCCTAGCAACAAGACCCAACCAATAATATTCTTGGGGCAGCTAATGGTCAATCAGATCACATGACCACAGTAGAAGAAGTAGAATTCATGtcatcatcatcttcatcatcgtcTAGTGATAGTCCTTGAATGGCGGCTCAGTCACATCAAAGAACAACGAAAGACATTGTCAACGAGATATTAGATGATTACGAGAAACTTACACGGCAATTATTTGAAAGTCTGTCTGCGACATCGCTGTATCGTGGAGCCAAGAGCGATGCTTCTGCAGAGGATGCAGCTAAGTTTGTGAATCAACTAACTGAAAAGGATAAAGAACTCCAAGCAGCAATAAAAATTGCCAAAGAGCAAATGGAATGTCAGAAACTAATTCAAGAAACCAAAGACAATATTTACAAAAAAGATCAGGAAATATTGAAACTTGAAAATAATTTAAAGGAAGCAGAACAAATATTATCACAAGCATTATTCCAAGCAAAAAAGAAGCTATCAGCAATCGAACAAGCAAATAAAGGATCTGTGTCGTCTGAAGAGCTCATCAAATATGCTCACAAAATAAGCAGTAGTAATGCAGTGGAAGCACCAACAACATGGTTGCCAGGTGATCCCAGACGACCTTACCCTTTAGACATTGAGATGAGATCAGGATTGCTTGGATCTGGGTTTGGTGAAGGAGCAAGTACCAGTGGTGATGGTTTAGCTACTGGAGCAGAGAATACAGCATCTTCTTTAGCTTTGCCATTACCAACTAATGATGGTGTTACAAATGGTCAGTCATCAGTGGGGCTATCTTGGCAGTCGCATCTACATGGACTCCCCACTACAACTGAACAACAAGACCCAACCAATAATATTCTTGGGGCAGCTAATGGTCAATCAGATCACATGACCACAGTAGAAGAAGTAGAATTCATGtcatcatcatcttcatcatcgtcTAGTGATAGTCCTTGA

Protein

Uniprot

Uniprot term	Description
Q9CQA5	Mediator of RNA polymerase II transcription subunit 4 OS=Mus musculus OX=10090 GN=Med4 PE=1 SV=1
Q561Q8	Mediator of RNA polymerase II transcription subunit 4 OS=Rattus norvegicus OX=10116 GN=Med4 PE=2 SV=1
Q7QH62	Mediator of RNA polymerase II transcription subunit 4 OS=Anopheles gambiae OX=7165 GN=MED4 PE=3 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10018	Med4	Vitamin-D-receptor interacting Mediator subunit 4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019258	Family	Mediator complex, subunit Med4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13208	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0070847	Cellular Component	core mediator complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15146	MED4; mediator of RNA polymerase II transcription subunit 4	-	Transcription machinery	ko03021	deepkoala