Gene detail

Detailed information of HK74SY85_g8248 in Paraphelliactis xishaensis sp. nov. Gene info

Gene ID	Annotation	Contig	Start	End	Strand
HK74SY85_g8248	INTERFERON REGULATORY FACTOR	ctg53	266904	270719	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HK74SY85_g8248

ATGGCAGGCAACGTTCCAGACATGATGGCATTCCCTTCACCCATCAGCAGCCACAACTCAAGTCCTGCCAACTCTGCAGACTTCAACATTTTTGACGATATTGACAGAATCACTCCCACCATTCCACCCATCCCACCATTTTCCTTTGCATTTGACCAACCCATGGACCACATGGGGTTGAAACCACAGCAGCCAATACCGTACACAGCGCTTAATGATGAGTTTATCTTTAAAAACAATTTCATCAACACTCTAAGCAATGCCCACGGCTTTTACAACCCCAATACAGAGAACCCCTATGAACCCACTTTGACAGAACTACAAAGCGTTTCCAGGAGTGAACAAATGGGCTACGCAGGGGGTGGTACTAGTCTACCTAATGACGGGGGGCTGACGTATAACAACATGACGTCATACAACACGTGTCAAAACTTCTTGTATCCTGGACAAAATGGTAATTAGATgatgagatgagatcaactttatttatacacgctaacctattcatgcaataaaaaaatactgatttccctgaataggggcgtgcACTGCTCAAgtgtggttcttgtgtggttcttgtgtggttcttgtgtggttcttgtgtggttcataaggggttcACGAACGGCTGAAAATGCGCTATAATGTTTTTATTGGGAAGGCGTTTAGTTTATAATTTAGGGTTTTTACATCTTTTTAATAATTGGGCGTGGTTAAGGGGTATATTGCCCATAACTTAACGCTAGTTTTATTATCGTAACTGCTGTAATTGTAATTTTGAATTAGTCTATACTTTATATATCTTTATTTCTTAACTCAACAGGCACCAATCCAAGTCATCAAATGGGACTCTTGAAGATGTTACATGGTGGTTCACCAACAGAGATGGTACGTACGTATTTCCAGCGCTAGTATTAGTATGAATCAGACTAGCTTAACTTATTATAAAAATTTCTTTATAATCCAGGTACATGAGATAAACTTAGCACCAGTAACAAGTGGCTTCAATATGGGTATGTAACATGCAACAATTTGGTCTAGTATAGACAATATCCTATCTAGGATCAGGTGCGCGGCCTTCTAATCGAGAATTGAATGATGttctcgctttgatttctcgtttatggcctcacagatcgttttgtatagatttaaaaactcctgcggacaaagcactgatggagagaagaggtaaatgacataccgcttgccccctggaagatcgccgcgataaagggatacatatgtAACACTAAACATTGAACTTTTTTTTCACGTTTCTTTCCACAGGAAGCAATCCCATGGATATATCTGCCAAAGGCACTTACTGCACAGCCACAAGAACTGAGGTGACATTCCACATATTTCACATTTGTTGCTAGTTTTGATGGACATAATGATattaatgagccatgttgtacaccttcaggtgcagccaatctcaaaccattctataatgattaatgagccatgttgtacaccttcaggtgcagccaatctcaaaccattctataatgattaatgagccatgttgtacaccttcaggtgcagccaatctcaaaccattctataatgattaatgagccatgttgtacaccttcaggtgcagccaatctcaaaccattctataatgattaatgagccatgttgtacaccttcaggtgcagccaatctcaaaccattctataatgattaatgagccatgttgtacaccttcaggtgcagccaatctcaaaccattctataatgattaatgagccatgttgtacaccttcaggtgcagccaatctcaaaccattctataatgattaatgagccatgttgtacaccttcaggtgcagccaatctcaaaccattctataatgattaatgagccatgttgtacaccttcaggtgcagccaatctcaaaccattctataatgattaatgagccatgttgtacaccttcaggtgcagccaatctcaaaccattctataatgactaatgagccatgttgtacaccttcaggtgcagccaatctcaaaccattctataatgaCTCACAGAGCAGCTCAAGACACTAAACACGCAAACGAAATAACAGGTAAAACTAGTTTTTGAAGTGTTTTAAGGCAGAGGTAAAACAGATAGTTGAGGTCTGTATCACACTAAATGGTCCAAGTAACGCAGACTCCTTGATGTAATATGCATATGAGATAAATTTGGTACTGCGTTAGTCTGCGTTACAGGAACTCTAACCAGTTTATTGTTCGGCTGCCcggggggggggggggggggggggatctcatacataagagggtggggatgctcgtcggaaattttgaaaatgacccctaaaaggtacctgagtcttgtcctggtgggcgtggcaacaaactattttaacccctaacaggtaccaaatctaaaacttcaaatcaatggaaattgtcctaatttcaatagtagtaaagacaatagcttcggatggcttctacttgtgtgtcataactttatttagccggggggaaaaaacaccctaaaaggtactggctaactctattggaggctcttttcgatttatgacaccctaaacggtaccacaccacggatttcaacccctaaaaggtacgacgagcatccccgcccttttgcccttttgtcggacatcgaagtcctcctccCCGGTTCGGCTGtaagtctgcgtgtgttgtttgcgcttatggttctgatgtcactaggaagagtaaaccatgcAAGCTGTTTTGCTTTTTTCTGCAGAGTGGTTATTGTCATGTCGGGTATATTACAGCAACAAAGAAGTCAGCTCATTTGAAATTAATAACACAGAACGTATGTGGAGAATTTTCTATGGAAATCCGGTTAAACCAGACGATGAAACAGGTTTAAACCAGTTGTATGGTCCTTACAAAGCCAAACAGATTCTACTTCCTGACAGCTCAAGTTCTGAAGACGTACAGCATGTCCTTGACAACTTTTATAAAGGTCTTGTTTTAGAGATGACTGATGAAGGAATTCTGTGGGCCACGAAGATTTGTCAATCAAAGGTGAATTGTCAGGTGATTATATTTTTTTGGCGCGAAAATGCGGAAGTGTTGAACTTATATCACGATTTTTAAATACAGTGAGCAATAGTGAATGGCCGATTTCAGGTGTAACGGAAAGAGCGGGCAGGCTGTTGTCATTGTACCTATTTATTAAAGCGTTTAATGCATTTTCCATTTGATTAGAGATTTGCAAATATGAATGCATTCGAGTTAGAGGTGTTTAAAACGTGGATTTTAAAACATGTTTTACTTACATACATATACATACTTAGTTTATTCAGAATCATCAGGAAAAAAGAACTATTATACATTATTGTGCTTATAGATAAATAAATAACATTTGTTGGAAACTTGTACATATTTTTTACAAAGAAAAACGTGGCTTTTAAGAATTTGGTATCGTCAATATCTGTTCTAGTCTTTGCAAACTGTTCAACACTACTAACATGCAATATTTCATTCATTTGCGGTCTTTGTCTGTGTGTTCATCAGATCTAACTTTCGATATGTTAATATATAAGGTTTACTTGTCACGTGGTCCACAAGATTTTACAAGGTTGGTACGTGACGTCAGGACCAACGTCATTGACTTCAGACAAGCCCAGAACAGCAGTCAAGAAAATCCACAACACAACATATTTGAGTCTACACGTGATTGTATGCTGTCCATCGGCGATGATCCGACCATAGCATTAATAAAGCTTGTTTTTACCCCTTTGAAAGCTAAAAAGATGAAGACAGAAAACCAGACGAAATCGTTCGCCGATATGGCAGGCAACGTTCCAGACATGATGGCATTCCCTTCACCCATCAGCAGCCACAACTCAAGTCCTGCCAACTCTGCAGACTTCAACATTTTTGACGATATTGACAGAATCACTCCCACCATTCCACCCATCCCACCATTTTCCTTTGCATTTGACCAACCCATGGACCACATGGGGTTGAAACCACAGCAGCCAATACCGTACACAGCGCTTAATGATGAGTTTATCTTTAAAAACAATTTCATCAACACTCTAAGCAATGCCCACGGCTTTTACAACCCCAATACAGAGAACCCCTATGAACCCACTTTGACAGAACTACAAAGCGTTTCCAGGAGTGAACAAATGGGCTACGCAGGGGGTGGTACTAGTCTACCTAATGACGGGGGGCTGACGTATAACAACATGACGTCATACAACACGTGTCAAAACTTCTTGTATCCTGGACAAAATGGCACCAATCCAAGTCATCAAATGGGACTCTTGAAGATGTTACATGGTGGTTCACCAACAGAGATGGTACATGAGATAAACTTAGCACCAGTAACAAGTGGCTTCAATATGGGAAGCAATCCCATGGATATATCTGCCAAAGGCACTTACTGCACAGCCACAAGAACTGAGgtgcagccaatctcaaaccattctataatgaCTCACAGAGCAGCTCAAGACACTAAACACGCAAACGAAATAACAGAGTGGTTATTGTCATGTCGGGTATATTACAGCAACAAAGAAGTCAGCTCATTTGAAATTAATAACACAGAACGTATGTGGAGAATTTTCTATGGAAATCCGGTTAAACCAGACGATGAAACAGGTTTAAACCAGTTGTATGGTCCTTACAAAGCCAAACAGATTCTACTTCCTGACAGCTCAAGTTCTGAAGACGTACAGCATGTCCTTGACAACTTTTATAAAGGTCTTGTTTTAGAGATGACTGATGAAGGAATTCTGTGGGCCACGAAGATTTGTCAATCAAAGGTTTACTTGTCACGTGGTCCACAAGATTTTACAAGGTTGGTACGTGACGTCAGGACCAACGTCATTGACTTCAGACAAGCCCAGAACAGCAGTCAAGAAAATCCACAACACAACATATTTGAGTCTACACGTGATTGTATGCTGTCCATCGGCGATGATCCGACCATAGCATTAATAAAGCTTGTTTTTACCCCTTTGAAAGCTAAAAAGATGAAGACAGAAAACCAGACGAAATCGTTCGCCGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10401	IRF-3	Interferon-regulatory factor 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR017855	Homologous_superfamily	SMAD-like domain superfamily	Interproscan
IPR019471	Domain	Interferon regulatory factor-3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11949	INTERFERON REGULATORY FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-