Gene detail

Detailed information of HK74SY85_g5896 in Paraphelliactis xishaensis sp. nov. Gene info

Gene ID	Annotation	Contig	Start	End	Strand
HK74SY85_g5896	ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV	ctg31	1844282	1848152	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HK74SY85_g5896

ATGCGAAAAAGCTCTAGATTGGCTTCAAAACTTTTGCACGAGGCTGCTTCGAGTATGCCCAAGAGTTCTAAACGATCAAGAGAGTCTAATGGAAGCACATCTGAGCTTGAATCGAGCACCCAGAAGCCTGCAAAAAAGCGGATTAAAGTGGAGCCAAAACCAAACGAACAAAACGTTAATGCTTCAAAGGTAGCAACCAAGACAGAAGGACGCTCGTCTCCTGCAGAAAAGTCTCGTAAAGGAAGCAGAAAAGTTAAGAAGGAGAACGATTTTGGCGCGAAAGATGAGCGGACCGAGGTCAAAGTAAATCAATCACCGAAAAGATCCTCTTCATCAGAGAATAAAAAGTTTATTGGAGCTCATGTCTCCATCAGTGGAAGCTTATGCAACGCTGTTTATAATGCAGTAGAGATCGGAGCTAAAGCGTTTGGGATGTTCTTGCGTTCTCAGCGACAGTGGAAAAGCAAACCGCTCGATAGCAAAGATGCTCAGCGTTTTCGCGAGGTTTGTGCAACTCATGGATTCTCTTCTTCCCACATCCTCCCCCATGGTATCTACCTTATGAACTGTGGATCACCAGACGAACAAACACTTGCTAAAAGCCGTGAGGTTTTGGTGGAAGAGTTGCAACGTTGTGAAATGCTGGGTTTAACTCTGTACAATTTTCATCCTGGTTCAACTTGTGGCAAGATATCAATAGAAGAATGCATCGGTAAAATTGCAGAAAGTATTAATTTTGCACATGGTAAAACAAAGGATGTCATCACCGTGCTTGAGAACATGAGCTGTCAAGGAAATACGGTTAGTATGTAGTCGCACTATCATATCCTTTTggggggggggagggggaggggggggggggggggTGTTCGAAGCCAGGGGGTGGGTGGCTTGGTGGAGGTTTGGCCCGAAAGAGCTCTAATCAATGTAAGCCAACCCCCCTCCCCACACACTGTGTTACTAAGTAATACTACATGAAATGTACAATGTAGTAGTCCTACTTATGCACTAGTCAGTTGTTTCCCCGACCCCCGGGGATGGTGGGATTTTACGGAAGAATAGCGGGGGAATTACCTGGCAATTACAGTAGATTATTGCCCTCATCACTGGGGGAATTACTTTGAATTTACGGAAAAACCATAACTCGATTACGTCACGGTCACGTGAGAGAAGCCGGTATCCCATCCAGCAAAATGGCGGCAGGTTTTGGAGCTTTTTCAACGACTTCGAGATTCAAATCTGTCACATATTGTCGACAGATTCACACTTCAGCTGCTGTTTACAAGCAGTGATGGAAGGGTTGCAGTTTTGAGTGGTTCCACTTGGAGTGTGTTGGCCTTCAAGGCCGGGCCACCAACAACAGATGAGTGGTTCTGCCTGTTGTGCAAACATAATTTGCCAAATAAAGATTGATTCCAGTGTGAACTTTATATATTAAAATTGGGTATGGGGGAATTACTATCTCAATTCCGCTCCACTCCACTGGAGAATATGTCTATTTTACAATGATGAATTTGCAATTTCCCCACTAATCCCCGGGGGTCGGGGAAACAACTGACTAGTGCATTATCGGGAGTGGACAAAACACTGACCCCCTAGTCCatggactacccatatggactaccccaatggattaccaaatggactgcccaaaAAATGGAATACCCCCAAAATTTTAGCATAATTTTTTTGCACTGGCGAAGTACGGTACCTTTTAGATCGATTCCTACGACTCGCCGCCATATTGATTTACAAATACCACAGGTAGCCCATTGTTATTTATGAATAACCACTGCTCACAAAAAGCGAAATTCAACTTGTGAGCTTCACTCTTATTTTTCTTTTTTAACAAAACGAATGAACTAATAAATATATATTTGGTATTTTTTCGATTCATCATCAGATGACGATTTTTACTGTGGTGTTTTGGATCTAAGTCCTGACCGGAACCCTTATTTATGTCCCAATTATTATGGGTAGCTAGTTTATACAATGCAATATTAAAGACGACATTTACAATTTTTAATTTTTTAATTTTTTGGGAATTTGACTTTATAAATAACAATGGGCTACCTGTGGTATTCATAAATCAATATGGCCCGAGTCGTAGGATCGATCTAAGAGGTACCGTACTTTGTCAGTGCAAAAAAAGGATGCTAAAATCACAGAGCAGTATTTTTTAGGGTAGTCCATTGGGGTAGTCCATATAGGTAGTCCATGGACTAGGGAGTCAGTGTTTTGTCCACTCCCCTACTTATCAGTAAAGTGTTTAAGACATATAGTATTTGCTCTTGAAGAATATTGGAACAAAATGTGCCAATGAAGCACTATATAGACTAGAAACAAAACATTATGGGAGCCcagattgggaacattacagggctgtacccagtatgagtcagatgggaaacactacagggctgtacccagtatgagtcagattggaaacactacagggctgtacccagtatgagtcagattgggaacattacagtgctgtacccagtatgagtcagattgggaacattacagggctgtacccagtatgagtcagattgggaacactacagggctgtacccagtatgagtcagattgggaacactacagggctgtacccagtatgagtcagattgggaacattacagggctgtacccagtatgagtcagattgggaacattacagggctgtacccagtatgagtcagattgggaacactacagggctgtacccagtatgagtcagattgggaacagtacagggctgtacccagtatgagtcagattgggacactacagggctgtacccagtatgagtcagattgggaacactacagggctgtaccctgtatgagtcagattgggaacagtacagggctgtacccagtatgagtcagattgggaacagtacctggctgtacccagtatgagtcagattgggaacagtacagggctgtacgcagtatgagtcagattaggaacagtacagggctgtacccagtatgaatatgaggcaagccaaggcagatacctcagtaaaatgagccttagccattgatcattttgttctgatggagttgtaaaaattatttttattactttatgttttattttgttctaaaagtgccatggcagagattctggtctggctacggGCATGCAGACCGTATGTGATTCTAAATGTTTGACATATAATGAACAAAAAATATCTGATGGCCTAGCTTGGCCTACCCCAGGTTGAGAATCTTGGTAAGATCTTGTCAAGATCCTTATTGGCTAATTTTAGCAATAGATCTTGTTAAGACCTCGACCTGGGACATGTTAAAATCAGTTTAAACTAGTTTAGAATAAAATAATTTGATGTGATGTGACTTCTGTAGCAAACATGTTAAGTCAACTTTCTCTATATTTGCTAACTTTGTCAGCAATAAAATTAGAATTTCAGGATCTTGGAACAAATATTTAAAAATGTTATGGCTTTTATAGATTGGGGGCAAATTTGAAGAGCTACGAGGAATCATTGACGGTGTAGAAGACAAATCACGTGTTGGTGTGTGCTTGGATACATGTCACTCTTTTGCTGCAGGATATGATATCTCAAACAAAAAAGGTTACGAGAAGGTCATGGTGGATTTTGAAAATATTGTAGGTTTTGAATATCTGAAGGGTGTCCATCTTAATGATTCCAAAGGTGATTTAGGCTGTCATCTAGATCGCCATGAGAACATTGGCAAAGGGAAAATTGGCAAAGAAGGCTTCCGTCTTGTCATGGAAGACAAGAGATTTGATGGAATCCCTATGATTCTAGAAACACCCTGTGTAAGTGATTCAACTTATACAAGAGAGATCAAGGCATTGTACTCTATGGTACCTATGCGAAAAAGCTCTAGATTGGCTTCAAAACTTTTGCACGAGGCTGCTTCGAGTATGCCCAAGAGTTCTAAACGATCAAGAGAGTCTAATGGAAGCACATCTGAGCTTGAATCGAGCACCCAGAAGCCTGCAAAAAAGCGGATTAAAGTGGAGCCAAAACCAAACGAACAAAACGTTAATGCTTCAAAGGTAGCAACCAAGACAGAAGGACGCTCGTCTCCTGCAGAAAAGTCTCGTAAAGGAAGCAGAAAAGTTAAGAAGGAGAACGATTTTGGCGCGAAAGATGAGCGGACCGAGGTCAAAGTAAATCAATCACCGAAAAGATCCTCTTCATCAGAGAATAAAAAGTTTATTGGAGCTCATGTCTCCATCAGTGGAAGCTTATGCAACGCTGTTTATAATGCAGTAGAGATCGGAGCTAAAGCGTTTGGGATGTTCTTGCGTTCTCAGCGACAGTGGAAAAGCAAACCGCTCGATAGCAAAGATGCTCAGCGTTTTCGCGAGGTTTGTGCAACTCATGGATTCTCTTCTTCCCACATCCTCCCCCATGGTATCTACCTTATGAACTGTGGATCACCAGACGAACAAACACTTGCTAAAAGCCGTGAGGTTTTGGTGGAAGAGTTGCAACGTTGTGAAATGCTGGGTTTAACTCTGTACAATTTTCATCCTGGTTCAACTTGTGGCAAGATATCAATAGAAGAATGCATCGGTAAAATTGCAGAAAGTATTAATTTTGCACATGGTAAAACAAAGGATGTCATCACCGTGCTTGAGAACATGAGCTGTCAAGGAAATACGATTGGGGGCAAATTTGAAGAGCTACGAGGAATCATTGACGGTGTAGAAGACAAATCACGTGTTGGTGTGTGCTTGGATACATGTCACTCTTTTGCTGCAGGATATGATATCTCAAACAAAAAAGGTTACGAGAAGGTCATGGTGGATTTTGAAAATATTGTAGGTTTTGAATATCTGAAGGGTGTCCATCTTAATGATTCCAAAGGTGATTTAGGCTGTCATCTAGATCGCCATGAGAACATTGGCAAAGGGAAAATTGGCAAAGAAGGCTTCCGTCTTGTCATGGAAGACAAGAGATTTGATGGAATCCCTATGATTCTAGAAACACCCTGTGTAAGTGATTCAACTTATACAAGAGAGATCAAGGCATTGTACTCTATGGTACCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01261	AP_endonuc_2	Xylose isomerase-like TIM barrel	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001719	Family	AP endonuclease 2	Interproscan
IPR013022	Domain	Xylose isomerase-like, TIM barrel domain	Interproscan
IPR018246	Binding_site	AP endonuclease 2, zinc binding site	Interproscan
IPR036237	Homologous_superfamily	Xylose isomerase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21445	ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003906	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0008081	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-