Gene detail

Detailed information of HK74SY85_g5652 in Paraphelliactis xishaensis sp. nov. Gene info

Gene ID	Annotation	Contig	Start	End	Strand
HK74SY85_g5652	50S RIBOSOMAL PROTEIN L21	ctg29	1005743	1009696	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HK74SY85_g5652

atgagtgggaaacctacggcatggagttacggtcacggtacggaatgaacgtcatctattcaaccaatcacagagcatgaaatcactgctcgtccaatcagaagcatgaatctatgtatcgacttgtaagcgttatgctaatggtacggtacctgcatggtcatggcatggcaccgacagtactgtaatcacttcccactcatactaaatctgctctaTAGCATATATACCGGTAATATCAAGTTGTAAATAACATAAATCTAAATTTGACATAAGTTGAGACTGATATTGATATCAATGGTATTTTTCAGGTATTTGTTCAAATGTACAGAAACTTCAATCAGTTCGTGGAAGTTTGCTGGTGAACAATACCCTTATGAAAAACAGGTAAGAAATTATATATTAAAATATAATAAAATCATAATCTTgagaacggtgcatgcgctgatgaatgactttcTGCTTCtcacctgttttcgtgtcctcttcagaatgttgaggacgtcaatggtctttttgaaagtcattcattagcacacactgtcctctttcactttatgttttattttgttttgttttatttcatttcatttcatttcatttcatttcatttcatttcgcttcgcttcacttcacttcacttcattttattttattttattttcactttatgtactgtttaataaacgagcaggagtgtgtttgaacgtttttgagtgtttttgacgctaagcggagtgtttttgaacttgataaaacacaaactgcaagtttattgaacagtttcaaaaactccaacctatgtttcataatttttactaaaatcttcaagatttatgtaagttttgccgataaaatcgaagtgaaagtttatgcaaatgaagacgaatctttatcagatataaagatccatccacgctatgtgattttcattgtgtttctcatgaattattaatgagtttTTGAAGTTTTTATTAATATTTTATGTTTGGTAAATCTCTCTAACCAATCTTGAGCAACACTTACTTCTTGAAATAgtatattattttgtttcagtcattgctattaataaggtatggacacgcaactccgaccggagtcaccttcggcacgaagtggcagataatctaaagctgcccctgcaccccggctgaactggttggggagggtgggtacgatctctttttgggccccgatttcttgtccaagttaaatacatgcaaaggcgtccttttaatatatataacctcacaaccaatcagagccgcttattttgccgccagaggacactcgttcatgagaagtgttacatttgtataaataacatttcttcaacagaatatacatattcaatgagtttgcatagCTGACTAATTTTTCAACATTTTCTTCCAGTCTTAAAACCTTCAGTGTTACAACAACAGCCCTTCAACATATAACAGCAACAGATCCTCTTGCTTTGATACAAAATGTTGATACAAGAACCCCTTCTAGTTCATCATCAGCGTCATTATCAGAAGATAGTGCTGAGGATGAAGATGAGCAAAATTGTATATCAAAAGTTCTATATAATCCAGGTTTGTtctgacactgaaccgtactggacccggttgttcgaaaggcgattagcgttaatccaggataaatcttaagaaaactattgacactaatccaggattaacactaatcgcctttcgaacaactgggcccTGATAGCTGAGTAGAATTTCTCTGACTGTCTCATGGCACAGACCAGCCATGCCTTGACAATGGAGTCATCTATGCCATAACAGTGCTGCAGTTTTAAAATTTCATATGAAATCTGTACTACATGTATTTCAGTATAGTTGAAACTCTCGTAAGCAGTCACCAAAACATTTATTTCTCCTTCATAGATATTATATCTAAAGTCCATGACGAGACAAAATTATCACAACACAGTgcacaagtgtttgctgtggtctatattggtaattataaaataactatgtgacgcgcgctctgattggccaaaggatgcgcgttccgcgttctctataagagcacacagtacgcgcgcacacattttcaaacatttttgtaacgaacaaaatagaaaacttgccttaaaatcataattgtattttataaaagaaatagaaaacttgcctgctgtgctatgttgagttatacgtcaagcacttgggaattataagaagactcgagaagtgtcgagaggcactcggctacacttcgtgcttctcctaacacaagattctctcatcttcttacaattcccacgtgcttctataactcaacatagcacgtgcgcatgttttctatttcttcagaataacaAATAATTATAATAATTTATTAGTCATTTGACTTGAAACCTAGCTTAGTAGCGTTGAAACATCATTGTTTTTTGTTTTATTGTCGTAATGTTTTATCATACAATAATTTATGTCAATATATTCTTTATACCTACTTTTCAGGTGGAAGACAATTCAAAGTTACAGTTAATGATACAATAACAATATTCAAAATTGCTGCCGAAGTTGGTGAAAAAATAAGATTAGAAAAGGTATAAAGTTTACTTTGACCCTAAGCAACAAAATATTCAATGCTCCATGTCATGGTTCACATAGCCTCctctgcagccaacccctgttgttacctgttgggattccttactctacctctggccgagggagacttGGCCCCTACCAAcgtgaagcattacaatcccttctggtcaaaagagacaggaagcccacagagacggggggaaaaagagagagagAGAGAGGTGTTTGTAGAGGAGGCTAGAtttcacagtcatatgaaattagagtagatttcacaagtgggaagtggttacagtactgtctgtgccgtgccatgaccgtaccgtaccgtacccaagcattccgattggatgaccagtgatttcattcgttgtgattggttgaatagatgacgttgattctgtactgtgaccataactccgtgccgtaggtgccgtaggtttcccactcatacgaaaacgactctaGTTCTATTGTAAGTCCGTTTTTCATTGTGTGACGTTTTTAATAATAATCCATTAGGTTCTTCTTGTTGGAGGTGCAAACTTTACTATCATTGGAAGGCCACTTCTTGAGTAAGTAGGAGCAAAACCACAAGCCAAGCTTGTAACATACTGTTGCTTAAAATCTGAAGCGAGTCGTGAACGCGAACTTCAGATGAATAGGATTATGCAAGCTGGGCTCCCTGTGTCAAAACCACACTATTATCAGCCTACCTAGACTGATTCCATAATCAGCGTTTTTGCAATGTTGAGTGATATTAGTATCAACCAAGAGCAAACAGACAATACTAATAATATTAAATGTTTATTTGTAGTGCACAATAAGATTTTAACATGCATATATGATCAAATGCGCAGACCAACTTATGGAATCAGTTTAGCACCGACACCAACACATTTTAcatcctcagaaacccaggcgtgttattctgtcactagtttcacactcccagaaaaataaaatcctggaaacgAGCACCATAATACACTTGGGTTCCCAAAGATGCACATTTAATATTTCTGTCAATTTGTTTTCCTTTTAGGCAAAAATTGGTAACAATTGAGGCAACTGTCATTGAGAAGACCAAAACTGCCAAAGTGATTGTTTTTAAGAAAAAGAGAAGAAAAGGTTATAAGAAAACGCAAGGTAAGATTACCAAGACAGAAAAAAATATTTGAAAATTTAAAAATCAAAAATCTGAGATGTACGTTTTTTTTCCCTTCAAATTATTGAATGTAGTGTTGGTGTATGTAGTGTTTTTCATTAAGTGAAAATGGTGTTTATTTATCTTTGTTTAACAGGTCACAGACAAGATATATCCGTGTTGAGAATCAACAGCATAAACATTAGCCCTTCAGAGCTTTCTCTTCCCACACAGTAAatgagtgggaaacctacggcatggagttacggtcacgGTATTTGTTCAAATGTACAGAAACTTCAATCAGTTCGTGGAAGTTTGCTGGTGAACAATACCCTTATGAAAAACAGTCTTAAAACCTTCAGTGTTACAACAACAGCCCTTCAACATATAACAGCAACAGATCCTCTTGCTTTGATACAAAATGTTGATACAAGAACCCCTTCTAGTTCATCATCAGCGTCATTATCAGAAGATAGTGCTGAGGATGAAGATGAGCAAAATTGTATATCAAAAGTTCTATATAATCCAGATATTATATCTAAAGTCCATGACGAGACAAAATTATCACAACACAGTgcacaagtgtttgctgtggtctatattgGTGGAAGACAATTCAAAGTTACAGTTAATGATACAATAACAATATTCAAAATTGCTGCCGAAGTTGGTGAAAAAATAAGATTAGAAAAGGTTCTTCTTGTTGGAGGTGCAAACTTTACTATCATTGGAAGGCCACTTCTTGAGCAAAAATTGGTAACAATTGAGGCAACTGTCATTGAGAAGACCAAAACTGCCAAAGTGATTGTTTTTAAGAAAAAGAGAAGAAAAGGTTATAAGAAAACGCAAGGTCACAGACAAGATATATCCGTGTTGAGAATCAACAGCATAAACATTAGCCCTTCAGAGCTTTCTCTTCCCACACAGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00829	Ribosomal_L21p	Ribosomal prokaryotic L21 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001787	Family	Large ribosomal subunit protein bL21	Interproscan
IPR018258	Conserved_site	Large ribosomal subunit protein bL21, conserved site	Interproscan
IPR028909	Family	Large ribosomal subunit protein bL21-like	Interproscan
IPR036164	Homologous_superfamily	Large ribosomal subunit protein bL21-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21349	50S RIBOSOMAL PROTEIN L21	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005762	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-