Gene detail

Detailed information of HK74SY85_g4717 in Paraphelliactis xishaensis sp. nov. Gene info

Gene ID	Annotation	Contig	Start	End	Strand
HK74SY85_g4717	60S RIBOSOMAL PROTEIN L14	ctg22	3134118	3137625	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HK74SY85_g4717

ATGGTGAGTCCACGTGTAGATAAAAGCTTCAATTCTTTCGCTTATATCTCGTTGTAACACCCATCGATCCTAACAATATTAAACACATGTGTTCTTTAGGTTTACAATCGTTTTGTTGAGGTTGGCCGGGTGGCCTTGATCAATTTAGGAGCCGATGAAGGCAAACTTTGTGTCATCGTTGATATCGTGGACCAAAACCGAGTAAGAATGGTTATTGATAAAAATATGCTACGTAAGCGAATTTAGAGTTGTGTCTTTGTTTGAAACTGTACTTAGTAATTGACTATATGTGACTAGCTTACAGGTTCTGATATATTGCTGAATGTGAGACCATACAGAGTTGCTATGTTGTATTATTATATGTTCTTTCTTGTGTCATCGTTCGAATGTGATTAAGTTGGCTTACTTACTAATGTAGCTTATATTTTGTAAGATTTGTAAGGACAATCTTTCCTGAATATCTTGACGTTACTTTTTGGAAATATTTCCATATTTATCTACATTTCAATACTTTAAGTTAACGTTGTTTATAATGATCATTGTTTACTTGGCTTGGATTTCCGACCTTATTATAAAGTGTGACACATAAAAGTTTAACCCTAAAAATGTCGTACTTTATCTCAAATGAGCAATATATCCCTAGTTTTGTATTCCAACTTTTACTCTTATGCATATTGTGGACTGCTGAATGATATTATAGTGTGTTGGTGACCATAGTTATAAGATACATGTATGAAGTGTGTTACACAAGAAATTACAAAAATAGGAAttacagcacaaagcgcaaatgtatgaccacctataatgtatttgcatactttcttctcggccattatccaatcagcattgctggattatctgatctaaatgctaatttgagaatggcgagataaaagtatgcgaacacattaaagacggtcatagttgagagcttcgcgttgtaaATTAGAATGATCAATAGTAGCTAACCTGAGTATACTAGTGTATTATGGGTTATTTTTATAATTTTGTTATGAATTGTACTGTTATGATGAAACGCACTGGGTTATGAACCTCATGATTCCATATAGCTTATTCTGAACAGTACAAATTAAAGGTgtacaagaacaatgtaagtgatctctgatcaaattctaaggagaattgatcaagatttctccattaagctgcttgaatttcaaaggagaagtcagattgtgatcagagatgccttatattttccttgcatagacccttcaagtgtttgtttatagcagtgaGTAATGATGGCTCAACACTCTCATTTGTTCTGAATAGGCTTTGGTTGATGGTCCATGTGATAACGTCTGTCGTCAGGCAATCAACTTCAAGCACCTGTCCCTGACTGACTTCAAGATCAGGGTAGGAAGATCCGCCCGTAGTGGACCCGTCAAGAAAGCTTTCGAACATGAAGAAGTTCAACAGAAATGGGACAAGACTGCCTGGGCAAAGAAACTTGTCATGCGTAAGAAGAGGACAAATTTAAATGATTTTGACCGATTCAAGCTCAAGCTTGCCAAGCAAAAGGTTAGTTGGCTTTCTCATGAAATTGCTTCGTGTAAATTATCACAGTGATTGCAACAATGGCACCAttactgccgattccgatgaaacgcgaccacctagactttgatttgatggtttgtactttgcattaggtggacgtcaatcacatgtgaatcatcgaaatatgaatagttttcgctcaataattcaatgttatcatttattagaataaaccaatatggaaattattctaacacgttaaagcttaatctaattccacctaaagcaatgtacaaactcaaacctcaaagtgtaggtggtcgcgtttcatcggaatcggcggtaaACACTAGACCTGAATCAGTAACACTTGGTAGTTAAACATTAATTTAAAGCAatgttaatattgataataatgtactttatgggtagaaaacaaaattacttgtaacccagtaggttacattgGAATTGTAATGAAGTTTAATTTGACATTTTACACAAATGTTGTTGAGTACATGGTGATGTTGTGATGATTTGCACTGGGTTATGAATGACATGATTCCATTTCAAGCATATTTCTGAACAATCCATGTATTCAACCCTTGTGAGTTCTTCTGAGAGTTGTAAAACAAACTTCATAAAATATTACTGAGTTTTATGTTATAGAAAAGAACGCCTGAAAATTATCCTTGTCTTGAGGTTATTTTGAGTGATTACATGTATAAAAACCCATTCCCACATTTTACTCTGATATTTTAGCTGATATTTCATTCAATTTACCTTTTCGGCATCACAGGGCATATGGTGTACCGGTGGGCATTTGActattgaccaaatattggtcagcagtcctcaccatttgaatattatatcactctttgtaatttattcacggaccattccaagtggccatagagtgtaaacacttgctcagtgccttttataaatttaatatagcgtgatgttttcatactacattGACTGGTACAttactgtcaccaaaaagttcgtacattgtcattgaattgccgtacaaatgcactaacttttgtacagtttatcgacttgatttagtttttcgattgtctaaatattagcaaaatctcgtttatcaaccttaatatttagaaaatagaaaaactaaatcaagtcgataaactgtacaaaagttagtgcgtttgtacggcaattcaatggaaatgtccaaactttttggtgacagtaacatcattgaagtacaccatgtgccctgtgatgtagcctgcatagcggctcttgggatgggaaagggactggggagagcagaggggagaagagaggccccctccccctatgggccactacgcaaactGCCTGCGATGCCAAAAAGGTGAATTACAATCCAGTGACCTTTGTTTCAAGTTAAGATTTTTACATTTTTTGTACTTTTGTCCTGAATGTTTTGTAAAGTCATTGGAGTATGATTGTGATATTTGCTATTGTTACTCTTGAATAATTATTATTATTAGTACCATCCATCTACCTTTTGTCATACAGTGTGTTTTCAAATGTTTAGTTGTCAATCAggcacatttcacaaagcgttcgtaacttacgagtagtcgtaagtcgtatataacaaacatgttaattgtacaccgaagagaaatttcacaaataaacttgacaaaagaagaagaaattaaatattgaagaacactggcttttgtaaatgactgaaaaagttgtgaattcacggaaaaactgataattattctggatttacgagtactcgtaagttacgaacactttgtgaaacGGGCTCCAGTGTGATACACTATCTTCAATGTATTTGCATTCTTTTCTCTAATTCTCACAAATACATTTGAGTATTGTGCTGTCCTGTACTGCTCAGCATTTCATTTAACTATTGATTTCTTTCTTGTAGAAAAACCGCATTCTCCGGGCTGAAGTAAAGAAGTTGAAGAAGGAAGAAAAATAGATGGTTTACAATCGTTTTGTTGAGGTTGGCCGGGTGGCCTTGATCAATTTAGGAGCCGATGAAGGCAAACTTTGTGTCATCGTTGATATCGTGGACCAAAACCGAGCTTTGGTTGATGGTCCATGTGATAACGTCTGTCGTCAGGCAATCAACTTCAAGCACCTGTCCCTGACTGACTTCAAGATCAGGGTAGGAAGATCCGCCCGTAGTGGACCCGTCAAGAAAGCTTTCGAACATGAAGAAGTTCAACAGAAATGGGACAAGACTGCCTGGGCAAAGAAACTTGTCATGCGTAAGAAGAGGACAAATTTAAATGATTTTGACCGATTCAAGCTCAAGCTTGCCAAGCAAAAGAAAAACCGCATTCTCCGGGCTGAAGTAAAGAAGTTGAAGAAGGAAGAAAAATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01929	Ribosomal_L14e	Ribosomal protein L14	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002784	Domain	Large ribosomal subunit protein eL14 domain	Interproscan
IPR008991	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR014722	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR039660	Family	Large ribosomal subunit protein eL14	Interproscan
IPR041985	Domain	Large ribosomal subunit protein eL14, KOW motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11127	60S RIBOSOMAL PROTEIN L14	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0042273	Biological Process	ribosomal large subunit biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-