Detailed information of HK74SY85_g4677 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg22:2706604...2712558
NR annotation: XP_020910979.1, nucleoporin SEH1 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5U4Y8Nucleoporin SEH1 OS=Xenopus tropicalis OX=8364 GN=seh1l PE=2 SV=1
Q4FZW5Nucleoporin SEH1-A OS=Xenopus laevis OX=8355 GN=seh1l-a PE=1 SV=1
A7YY75Nucleoporin SEH1 OS=Bos taurus OX=9913 GN=SEH1L PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR037363FamilySec13/Seh1 familyInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11024NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005198Molecular Functionstructural molecule activityInterproscan
GO:0031080Cellular Componentnuclear pore outer ringInterproscan
GO:0034198Biological Processcellular response to amino acid starvationInterproscan
GO:0035859Cellular ComponentSeh1-associated complexInterproscan
GO:1904263Biological Processpositive regulation of TORC1 signalingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14299SEH1; nucleoporin SEH1-Membrane traffickingko04131deepkoala

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