Gene detail

Detailed information of HK74SY85_g4209 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg21:801538...802740
NR annotation: XP_031549421.1, DNA excision repair protein ERCC-8-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

HK74SY85_g4209

ATGCTTCAGTGTCTGACATCAAGAGAGCTTGGCCATCATCCTCCTTACTACTTAGAAAGACTCGAGAAAAAAAGACGCACCGAGGCCATATGTTTGAGCCAAAAAGGCGACTTTGAACAAGGCCATACGAGTGGTGTTAACTCAGTAGATATCGATCCTGTTGAAGGACGGTATTTATTGTCTTGTAGTTCAAGCTCAAAGATTCTAGTTCACGACACATCAGTGATATACTATAACAAGACGTTTAAATGCGAAACCGTCTCTACAGTTGATAGAACTGTCAAAGGCAACCACCAACATAGCATTGAGACAATCCAGTGGTATGCACAAGACACTGGTATGTTTTTGACAAGTTCTTCTGACAAAACGTTAAAAGTATGGGACACTAATGCATTACAGGTTGTTGAGAATTTTAACTTTGAAGGAATTGTGTACCATCACCAGATTGGCAAAGAAACAAAAAAACATTGCCTAGTAGCCGTAGGTTGTGAAGATAGCAGAGTTTATCTCTGTGATCTGGTCTCTGGATCAGCAAGTCATATATTAAGGGGACACACAGATGCCATCCTCTCTGTAGCTTGGTCGCCAAGGAATCAGTATCTATTGGCTTCTGGTAGTCGTGACAACAAAGTGCTTTTCTGGGATATCAGGAAAGCTACAGGAAGTCTCTTTACTCTCGATCAACATAATGACAAAGGTTGTTCTGGAACTGTTAACACTAAGACAGCTCACAATGGGAATATAAATAGTTTACACTTTACAGGCAATGGGTTATTTTTATTGACCTATGGTACTGACGATCGGTTGAGGCTATGGGACACATACACAGGCAAAAATACCTTGGTCAATTTTGGTCGCATTAGCAACCCTTCGCACAAGTCTGTTCAGTGTGCTGTAACTGTGGGACATTCAGCTGATTTTGCATTTGTACCAAGCTGTGGCAACATTGAGGTTTTTGACATCAATTCTGGTAGGAAAGTGAACTCTCTTGCTGGTCATTACAGCAATGTCAACTGTTGTACATTTCAACAGAATTTCCAAACACTTTTCAGTGGGTCAAATGACTGTCAGTTGTTGTCATGGTCACCAAATATGGAACAGGATAGACCACCTCTTGAAAAGGATAACAAGGCTCAGCCTGATGTCACTTCAAAGCTTAAAAAGAACTTTGACCCATATCAAGATACTTGGAGTGATGAAGACATGCTTCAGTGTCTGACATCAAGAGAGCTTGGCCATCATCCTCCTTACTACTTAGAAAGACTCGAGAAAAAAAGACGCACCGAGGCCATATGTTTGAGCCAAAAAGGCGACTTTGAACAAGGCCATACGAGTGGTGTTAACTCAGTAGATATCGATCCTGTTGAAGGACGGTATTTATTGTCTTGTAGTTCAAGCTCAAAGATTCTAGTTCACGACACATCAGTGATATACTATAACAAGACGTTTAAATGCGAAACCGTCTCTACAGTTGATAGAACTGTCAAAGGCAACCACCAACATAGCATTGAGACAATCCAGTGGTATGCACAAGACACTGGTATGTTTTTGACAAGTTCTTCTGACAAAACGTTAAAAGTATGGGACACTAATGCATTACAGGTTGTTGAGAATTTTAACTTTGAAGGAATTGTGTACCATCACCAGATTGGCAAAGAAACAAAAAAACATTGCCTAGTAGCCGTAGGTTGTGAAGATAGCAGAGTTTATCTCTGTGATCTGGTCTCTGGATCAGCAAGTCATATATTAAGGGGACACACAGATGCCATCCTCTCTGTAGCTTGGTCGCCAAGGAATCAGTATCTATTGGCTTCTGGTAGTCGTGACAACAAAGTGCTTTTCTGGGATATCAGGAAAGCTACAGGAAGTCTCTTTACTCTCGATCAACATAATGACAAAGGTTGTTCTGGAACTGTTAACACTAAGACAGCTCACAATGGGAATATAAATAGTTTACACTTTACAGGCAATGGGTTATTTTTATTGACCTATGGTACTGACGATCGGTTGAGGCTATGGGACACATACACAGGCAAAAATACCTTGGTCAATTTTGGTCGCATTAGCAACCCTTCGCACAAGTCTGTTCAGTGTGCTGTAACTGTGGGACATTCAGCTGATTTTGCATTTGTACCAAGCTGTGGCAACATTGAGGTTTTTGACATCAATTCTGGTAGGAAAGTGAACTCTCTTGCTGGTCATTACAGCAATGTCAACTGTTGTACATTTCAACAGAATTTCCAAACACTTTTCAGTGGGTCAAATGACTGTCAGTTGTTGTCATGGTCACCAAATATGGAACAGGATAGACCACCTCTTGAAAAGGATAACAAGGCTCAGCCTGATGTCACTTCAAAGCTTAAAAAGAACTTTGACCCATATCAAGATACTTGGAGTGATGAAGAC

Protein

Uniprot

Uniprot term	Description
Q5BIM8	DNA excision repair protein ERCC-8 OS=Bos taurus OX=9913 GN=ERCC8 PE=2 SV=1
Q8CFD5	DNA excision repair protein ERCC-8 OS=Mus musculus OX=10090 GN=Ercc8 PE=1 SV=2
Q13216	DNA excision repair protein ERCC-8 OS=Homo sapiens OX=9606 GN=ERCC8 PE=1 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR042238	Family	DNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46202	DNA EXCISION REPAIR PROTEIN ERCC-8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000109	Cellular Component	nucleotide-excision repair complex	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0006283	Biological Process	transcription-coupled nucleotide-excision repair	Interproscan
GO:0031464	Cellular Component	Cul4A-RING E3 ubiquitin ligase complex	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10570	ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8	-	DNA repair and recombination proteins	ko03400	deepkoala