Gene detail

Detailed information of HK74SY85_g4173 in Paraphelliactis xishaensis sp. nov. Gene info

Gene ID	Annotation	Contig	Start	End	Strand
HK74SY85_g4173	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	ctg21	229477	231659	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HK74SY85_g4173

ATGGCGGACAAATTGAGAAGAAGATCGTCAAATAAACAGCAAAAAGGCAACAAATCTAAGCGACTCGAGTTTAAAATCAGCTGGAATAATGAACAGAAGGAAATGAAGGAGCTGGAGGAGCGATATCAGAGCGTAAGCACAAATATATGTGATGTTAACTTGTATTTTTCTCTTGTCAACAAAGGTTTTGCAAGTACGGTACACGTGATCGTGTTCGTATCGTTTTAGTAAAATTGTTGCTAGTTTGGGAAACGTTTTTAATGTGTCCTTTCAATCTATAATACTATACTTAGTTTGTACGGTTTTTAGCCTTTAATATTACACAATTGACTATATTACAACTGTGAAAGttatgtaccagtcaattccaaaagtgcccatcccccccccgggcaaccccccgggcatttgactttttgaaaaaatgttggtcaaattcccctccatgcgggccaattacgtgatcaaatgcccccctgttcggtctccactgagcgtcaaatcttagaatttcactcaaataaaaattatataaaagtaataatttgaactattaccccataaaaatatgaaatatacatgatagaaaataattttgttactggcaataattattgttttattttataaaaaaatgtatcagtttccttttttttttttttttttttggttcggaaataattcaatagtcaaatgcccgccggtccgggctttattcagcgtcaaattccccactatgcgggacgtaactacggtcaaatgcccgagggttgcccgggggggggatgggcacgtttggaattgactggtacatTACCATTGCAATACCTCGATCGCACCCTGTAGTTTATCCTCGTTTTAAATATCGATACCAACCGATTACCGATTGATGTTaaaaaaatccggaaattccggttcagatgtaaatggtaagcgctattttggtttgaccaaccagaaaatttccaagattttcggttcgtctgaaaaggtagtctcgattccccggttggaaattctgaatggtcggtCGCTTACCATTTTAcaaacccaagcatttcttaccagttccaggccctttccaatcacggtcatttgaatcagccagtttcattggttgtttaccaagtgtttatttccattcgggaaatttgcttaccatttgaacctactaaaaaacggttggtcccaaggattctttccggatttttttggtaaatggtaagcaCTCCTTATCAACCAATTCCCGGACCAATTAGAACATAAAATATAAATCGATTTTTTGTACCAACTTTTTGCTTTAATTCTTTAATACATAATATAAGCTTACTGTATGTTGATTTTCAATGGGCAGTTTTCATTGATTCGATACACTGACAAGTTTGCTAATGTGGAAATCATTTGTCATTATTATTTGTACACACTTGATCAGGTTTAATAGTAGTGCTGTTTGTGTCATTTATAGATTGATGTTGAATCTCTGTCAAAGTTCTCTGATTTCCCTCTCTCAAAAAGGACTTTACAAGGTACAGAACTAACTCAATTTGAATCTAATTAAAAAACAACAACAACAAgttattgcttatcaccaccgaacagacaggtggtgcagctcaatggggtcaaactgaaagcatgtgaaggcacctctggcggccactatacagatgtatgaccccagaacacagctctaaccagtttgaatttagttaatattgagccaagaattgaaagtgataccccagagatgggaggcgagcattttactaccacgccatcctgacTCCCCTTTAGAATACATGTATGTACATACTGTATATGGTTTTGTAAGTCACTGATGATGTCAGAGGTTAGGTACACCTGACACATACTGTATGCGAAAGTATTAAAGCCCCAAGCTGTGACACCTACATTATATAGTCTCTTTGCTACAGTGGCCCACAAGTGTCACATGAAATCACAGCAAATCACAAAGAGCCTTCATGTTGTATCTTTTAGGGCTCACTCATACTGGTTACATGAACCCAACTGATATTCAAAAGCAAGGCATTGCAGCAGCTCTCAGAGGATGTGATGTTCTTGGAGCTGCAAAGACTGGTTCAGGAAAAACACTTACATTTCTAATACCAGTATGGGTTTATTTCATTCTGTCATGCAATAAAGTTGAAACCTCTCTACAATATATGGCGGACAAATTGAGAAGAAGATCGTCAAATAAACAGCAAAAAGGCAACAAATCTAAGCGACTCGAGTTTAAAATCAGCTGGAATAATGAACAGAAGGAAATGAAGGAGCTGGAGGAGCGATATCAGAGCATTGATGTTGAATCTCTGTCAAAGTTCTCTGATTTCCCTCTCTCAAAAAGGACTTTACAAGGGCTCACTCATACTGGTTACATGAACCCAACTGATATTCAAAAGCAAGGCATTGCAGCAGCTCTCAGAGGATGTGATGTTCTTGGAGCTGCAAAGACTGGTTCAGGAAAAACACTTACATTTCTAATACCAGTATGGGTTTATTTCATTCTGTCATGCAATAAAGTTGAAACCTCTCTACAATAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-