Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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Genomic Location: ctg13:1584996...1603683
NR annotation: XP_020911601.1, ATP-dependent RNA helicase DDX54 [Exaiptasia diaphana]
| CDS | |
| HK74SY85_g3192 | |
| Transcript |
| HK74SY85_g3192 |
| Protein |
| HK74SY85_g3192 |
| Uniprot term | Description |
|---|---|
| Q8K4L0 | ATP-dependent RNA helicase DDX54 OS=Mus musculus OX=10090 GN=Ddx54 PE=1 SV=1 |
| Q8TDD1 | ATP-dependent RNA helicase DDX54 OS=Homo sapiens OX=9606 GN=DDX54 PE=1 SV=2 |
| A2YV85 | DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028228 PE=2 SV=2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08147 | DBP10CT | DBP10CT (NUC160) domain | Domain | Interproscan |
| PF00270 | DEAD | DEAD/DEAH box helicase | Domain | Interproscan |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012541 | Domain | DBP10, C-terminal | Interproscan |
| IPR000629 | Conserved_site | ATP-dependent RNA helicase DEAD-box, conserved site | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR014001 | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR050079 | Family | DEAD box RNA helicase | Interproscan |
| IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR011545 | Domain | DEAD/DEAH box helicase domain | Interproscan |
| IPR033517 | Domain | DDX54/DBP10 family, DEAD-box helicase domain | Interproscan |
| IPR014014 | Domain | RNA helicase, DEAD-box type, Q motif | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47959 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0003724 | Molecular Function | RNA helicase activity | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K14808 | DDX54, DBP10; ATP-dependent RNA helicase DDX54/DBP10 | EC:5.6.2.7 | Ribosome biogenesis | ko03009 | deepkoala |