Gene detail

Detailed information of HK74SY85_g25527 in Paraphelliactis xishaensis sp. nov. Gene info

Gene ID	Annotation	Contig	Start	End	Strand
HK74SY85_g25527	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	ctg411	299493	302980	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HK74SY85_g25527

TTAGGAAAAACTATCCAGACAATAGCCTTCCTCTATTCACTGTGTAAAGAGGTAACATTCAATGTACTAtaattattattatttatgtttcttcacatttgtattttgtatttattttgtatttatttatttattattattattattattattattattattattattattattattattattattattattattttttttttttttttaACTGTCAGATGAAAACATTGGCTCCttaaagtccataaactcaatgtttttattttgaacattgcttcttagtttataaagtgattactagcacagttcattattactggatgtgaactccacattttctgagttatggttttaaatgtgattaatatgctattttgatgacatcaaagaagTGTCAGTACTCCAAGAGTACTCCTTTCTGGTTGCCCCTCCCCTCCCCCACTATCGCTGTTTTGGCTCAGCCCTATTTCTTGAACGTTTgggcccggttgttcgaaaggcaattagcgctaatccatgattagcgtcagttttctttagatttaatcctggattagcgctaatcgcctttcaaaacaaatgggcccTGCAgttttggcacaggaaccccaaaattcccacaaactctccaaatccccactagaacacctgttTCTATTTGTTTGATTTAATTTAATTTAAAATCTAAGCTTTTAGGTCATTGACCCATCGTCAGGGATGATACATTGATTTTTCACTCCCCCTAACTGCAGGGACCCTGATGTATCAATGACCTGAACGCTGGGATTTTAATTAAAGAAAATCAAATAAAGAGAAGTAAAACTGAGTGAGATTTAATGTAAGTTGTTGTTGTGTATTCCAGGGTCACTGTCAAGGACCATTTCTTATCAGTGCTCCACTGTCTACTTTAATTAACTGGGAAAGAGAGTTTGAATTCTGGGCACCAGAAATGTACGTTGTCACGTATGCAGGAGACAAAGAGAGCAGAGCAACCATTAGGTATTGaagtggtccatactgatcaacatccactttctcgttttgatttcaaagagcccagaggagaatttagaatttgattagtgatcacttacgttgttcttgcatggaaccatttaTTTAGTGCTTGATTTGTCAGATGTATAGCCCTTCTGTTCTAACATATTTAAAgatctttgatcaaatgctaggttctcctcaaaaaatattttgattccaaaggagaattcagaatttaatcagagctcactgactcttatgtggacgccATGGCTTTCTTTAGCCACCTTAATTCTCCTGTGCTCATCTGTTCTGTTCCTGTATTCTAGAAATTATGATTTCTCCTTTGATGAAGATGCAATCAGAGCTGGATACAAGCCTTATAAACTCAAGGTAAGTCATTCTTGCCCTGTACTAATAAACCAGCCCAgccattagtgctaacccagctgaagtaaatctcagaaaacaattcaatttaatccaggattaacaccaatGATCCCATGTAGAAAACAGTACTCATATCTCACCCAGTCcaaagcttgacataattgttcaacctgtggggtccccagtgcgactagattttatccagtggcgaataactctttaaatatctagtcaccaactggcccctaaaggttttaaacttccgaaacataaagaccaatatagaatgtctattttggtgtcgactaagtctaaaacttaggggccatgtggctccaaaggttttttTTGGGAAAGTCAAGCTTTGCAGTTTTTCACAGTCGTACAGAATGTGCTCTGTGCAAGCAGTAATGCCAGAGAAAGTCCTACTTGTCATCTTATTCTATTTGGACTGTATATACAGTAGAACCCAgtggtggatccaggatttttgacggggggtgactgttaccaagggtgccatcaaatcccacactaactgcaccaaatgatagaaacaaatagtccaaggggagggggggggggggggggggggggtatgtggctagccactcccttcgccattcctggatccaccccTtagaacccagctaactcaaactcccaagggaaacagaaaatagttggagtatgcaggggttcTACTGTAATTTTTGAAACAATCTTCTCATTGATGTTTAATTGCAGAAAGAGTGTCCAGTAAAGTTCCATGTTCTGTTGACTTCCTATGAACTAATAGCAAGTGATGCTAACACACTACAGTCTATTGACTGGGCTGTGCTAGTAGTAGATGAAGCTCACAGACTAAAGAACAACCAGTCTAAGGTAAAGACACTTTTATAAAGCAAAGCCTGAGCTTACAGGGCTGGAAAAAATACCATATAAACGGGGCCTAAAAAGAAGTATTTTATAACGGGATGTTGGTAGGATAtcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacattttcagtagggtgttggtacgttttcagtagggtgttggtacattttcagtagggtgttggtacgttttcagtatggtgttggtacgttttcagtagggtgttggtacgttttaagtagggtgttggtacattttcagtatggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtacgttttcagtagggtgttggtGGGATGTCCCTCTTCCACACTAAAATAAGACAGTACGAAACAATTTATTATACCCAGTCTAATGTTTGGTATCGTGGTAATCAGTGGTAAAATCATTTAAAAAGGTTGAGGAAGATTAAATTTTACCACTGaattatacccaggtccataagataatactaaacaattctacccaggtccataagacaattctaaacagccaggtccatactgacagtactaaacaattatacccaggtccataagacaattttatactaaacaataatacctaggtccataagacaatactaaacaaccaggtccacactgacaatactaaacaattatacccaagtccGATCCATATTGTCACTATTGTATTTTGGTTTACCTCAGAGATTTGAGTACCCCCTTCCCACCTACATACAGTAGATATTGCTTAGTATATTTATGTCATGTTTGTTTTTGTACACATACATAGTTCTTTAGATGTCTAAGTGACTACACTGTTGATTACAATTTACTGCTAACTGGCACTCCACTACAGAACAATCTAGAAGAACTATGGAATCTACTCAACTTTCTTTCTCCCTCAGAATTCTTAGGAAAAACTATCCAGACAATAGCCTTCCTCTATTCACTGTGTAAAGAGGGTCACTGTCAAGGACCATTTCTTATCAGTGCTCCACTGTCTACTTTAATTAACTGGGAAAGAGAGTTTGAATTCTGGGCACCAGAAATGTACGTTGTCACGTATGCAGGAGACAAAGAGAGCAGAGCAACCATTAGAAATTATGATTTCTCCTTTGATGAAGATGCAATCAGAGCTGGATACAAGCCTTATAAACTCAAGAAAGAGTGTCCAGTAAAGTTCCATGTTCTGTTGACTTCCTATGAACTAATAGCAAGTGATGCTAACACACTACAGTCTATTGACTGGGCTGTGCTAGTAGTAGATGAAGCTCACAGACTAAAGAACAACCAGTCTAAGTTCTTTAGATGTCTAAGTGACTACACTGTTGATTACAATTTACTGCTAACTGGCACTCCACTACAGAACAATCTAGAAGAACTATGGAATCTACTCAACTTTCTTTCTCCCTCAGAATTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45623	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-