Detailed information of HK74SY85_g20078 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg230:263625...299167
NR annotation: XP_020909422.1, lysine-specific demethylase 5A [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P29375Lysine-specific demethylase 5A OS=Homo sapiens OX=9606 GN=KDM5A PE=1 SV=3
Q3UXZ9Lysine-specific demethylase 5A OS=Mus musculus OX=10090 GN=Kdm5a PE=1 SV=2
P41229Lysine-specific demethylase 5C OS=Homo sapiens OX=9606 GN=KDM5C PE=1 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02375JmjNjmjN domainFamilyInterproscan
PF02928zf-C5HC2C5HC2 zinc fingerDomainInterproscan
PF21323KDM5_C-helLysine-specific demethylase 5, C-terminal helical domainDomainInterproscan
PF00628PHDPHD-fingerDomainInterproscan
PF08429PLU-1PLU-1-like proteinFamilyInterproscan
PF02373JmjCJmjC domain, hydroxylaseDomainInterproscan
PF01388ARIDARID/BRIGHT DNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR003349DomainJmjN domainInterproscan
IPR036431Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR004198DomainZinc finger, C5HC2-typeInterproscan
IPR048615DomainLysine-specific demethylase 5, C-terminal helical domainInterproscan
IPR013637DomainLysine-specific demethylase-like domainInterproscan
IPR003347DomainJmjC domainInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR001606DomainARID DNA-binding domainInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR047970DomainLysine-specific demethylase 5A, second PHD fingerInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10694LYSINE-SPECIFIC DEMETHYLASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000785Cellular ComponentchromatinInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0032452Molecular Functionhistone demethylase activityInterproscan
GO:0034647Molecular Functionhistone H3K4me/H3K4me2/H3K4me3 demethylase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11446KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylaseEC:1.14.11.67
Chromosome and associated proteinsko03036deepkoala

TOP