Detailed information of HK74SY85_g13234 in Paraphelliactis xishaensis sp. nov.

Genomic Location: ctg106:432779...442944
NR annotation: XP_020899048.1, roquin-1 isoform X2 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q4VGL6Roquin-1 OS=Mus musculus OX=10090 GN=Rc3h1 PE=1 SV=1
Q6NUC6Roquin-1 OS=Xenopus laevis OX=8355 GN=rc3h1 PE=2 SV=1
Q5TC82Roquin-1 OS=Homo sapiens OX=9606 GN=RC3H1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18386ROQ_IIRoquin II domainDomainInterproscan
PF21206Roquin_1_2-like_ROQRoquin 1/2-like, ROQ domainDomainInterproscan
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR041523DomainRoquin IIInterproscan
IPR052249FamilyRoquin domain-containing proteinInterproscan
IPR048575DomainRoquin 1/2-like, ROQ domainInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13139RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0000288Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0003725Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0010494Cellular Componentcytoplasmic stress granuleInterproscan
GO:0035613Molecular FunctionRNA stem-loop bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15690RC3H; RING finger and CCCH-type zinc finger domain-containing protein-Ubiquitin systemko04121deepkoala

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