Gene detail

Detailed information of ENSZWYP00000000111.1 in Lamellibrachia columna Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSZWYP00000000111.1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	chr11	23501523	23527263	-

Gene Structure

More details in Jbrowse Sequence

CDS

ENSZWYT00000000112.1

ATGCCGTACTTTGTGATTGTCAACAACACGGTGCATGACCTGCGGTACATGGAGGAGGACGAGCAAGCTGACCTGTGGCTTGACATCACTCCACAGCAGTGTGTGCCGTTCTGGCCAGTGACCGACTCATACAGGATGTCAGTGAAATACCGAGAGAGCAACGTATGCTCCGCTCACTTTGACGTCAGTAAGTCTCACCAGACGGTGCTGCGTATGGACCGCGGGACTGCCCTGTGTGTGGAAGTGGTGGGCGGCACAGACACCTCGGTCACCATCACCCTGTTGCCCTACGACCATGGAGACGCCCCAGTGAGGATGGAAAATCTCTGTGATGACGTCTTCATTAAACTACATCAAAAGAACCAGAGCCAGGTGTCACTGCTGTCACCCAACCAATCGGTGCTGTACACGTGGGACAACCCAAGCACTGAACGCACGCTAATGTGGAATGTCTACAACAGGAAGAAGCCTAGCTACCCAGCATTCATTGCAAAGGATGGATTTGGCAAAGTGGCCCTCAGTATCCTGACGATAAAGAACATGCAGCGAGTGACAGACAACAGGAATGGAGTGGAAGACAGCACCGATGATGAGGACAGTGAAGTGGAGTCTTCGAAGACCCAGTTGGTGAAGAACACTAGGATGGACAAAGTGACCGTCTACTGGGTTTCGTATCTTGACCGTCTACAGCGAGTCTTGTTGTTCACGCAGGACGAGAGAGTCGCCAAGAAAGTCAGGAAGGTTAACGAAGCTGAGCAAGCAAAGACCGCTGTCTTTCTGTCACTCGGTGGCATTGGCATGTCACTCATCAATGGACGATGCGAGGAGGTTGCCTACGTGACCTTGTCGAGCAGTGCTGCCCTCTGGGAGGTCGAGATGCGAAACAAATGGAAGACGTTGAATATGGAGCTGGCATCATGGCTTGAGGAACAGTGGTCCAAGAACGTCACCAACGTCACCTTGGAGGACGTCATGCAGGCTGACCTGCAACACATGGAGATGAAGAAACCCTTTGTAGGGGCATTGAGGAGGGTGTATAACCCTGCCCTGTGGGTGCAGTATCGGCAGTCAGAACACCACACATACCTGCATGCACGGGTACATCGATTGCAGATTGACAACCAGCTGACTGATGCCTACTTCCCCACTGTGCTCTTCCCAACCCCTCTTCCATCCTACGCTGTGAAGAAAGCGGGCCCCAGACCTTTCATTGAGATGATCGTAGCAAGGCATCAAGTGCCAGAGCAGAACATTGATACTTTTAAGTATGTCAAGGTCCTTCTACAAGAGTTGAGTCTACAGCTGGACAAGGGCTTCATTCTGTCCTTACTGGACATTTTCTCTGGTCAACAACAGGCCCAGAAGGAGAGTGCTCAGCTGCAGGCGGATCTGACAGTGGCTCGACGCAGTCTTCGTGACTTGGCAGCAGTCCAGGTGGCCGCAAAACCTCAGAGGATCTTGTTTGAGTATCTCCACCTCTCTCCAATCAAGTTGATGTTGAGTTTCTCGCTGGACGGCCGTATCCACCGTGCCTCCAAGCCAGACTCCATCAGTGCAGACATCATAGAGTTCTTCCTCACCTCGGTTGGAGCCACCATCACAGAGATGAAGGATGTTGAGCTCAAGATGGCATTCTTTGAGCGGCAGGGAGTGCTCCTGACCTTTGACCAGCTGGCCTCAGAGGCCAAGGGTCACTACATCCTGCAGGCCGTGCAGCAGGCGTATGTGTTTGTGCTGGGCCTGGATGTCCTGGGAAACCCCTACGGACTCGTGAAAGACTTCACAAAGGGGCTCGGCGACTTCTTCTATGAACCCATGGTGGGAACTATCCAAGGCCCAGACAAGATTGCTGAGAACTTGGTGCGAGGAGTGCAGAGTCTGATGGGACATACTATAGGGAGCATGGCTGGGTCTGTGTCTCTCATCACCGGCTCCCTTGGGAAGACACTCGCTGTCTTGTCTTTTGACAGCGACTACAGAAAGCGGAGACGGCAGTACATGCAGCAGCACCCTGCTCATCTACCCCAGAGCTTCTACCTCGCTGGACGTGGCTTTGTCATGGGGGTCGCCCTTGGTCTGTCGGGGGTCATTGTGCACCCCTTCAGGGGTGCCCAGGAAGAAGGGGTTGAGGGATTCTTTAAGGGTGTTGGGAAGGGTCTCCTTGGGTTGATCACAAAACCACCAGGGGGCACTGTTGACATGGTCAGCATGGCATTTGACGGCATTCGAAGGGCTGCAGAGATGGGTGAAGACGTGATCATCAGAATGAGGCTACCTCGGTACATCAGTCCATATATGGGCCTGAAACCTTACTCACCCTATCAAGCGGTTGGTATGAGAATGCTCAACAATGTGGCCAAGGGAAAGTTTGCAAAAAGTGACATCTACTGGGCACATGCTGCACTAAACTCTGATGATCGGGCAGATGTGGCGCTAGTTAGTGACAAGCGTGTCTTGCTGCTGGGGCGGTGTAAGTGCTGGGGTGACTGGGACGTAGAGATGGACGTTCCCCTGGAGGACATCATGGCTCCCCCTGCTGTCACTGACAACAGGCTAGTCTTCCGAGTGCGTGAGGGTGCTGGGTTCAACCTCATCACCAGTGGCGAACGGGCGATTGCCAGTGACGATCACTCCGTGTTACTATGGTTACAGAAGAAGATTGAGAAGGCCATGAACTTGGACCTTTAG

Transcript

ENSZWYT00000000112

CTGTTTGTGCAGGTTTTCCTTGTGTTCATGTTCGTCCGTCGAGTCAACGAGGACCACTCTATTCATCTGGGGGTAGTTGGGGCTGGATCTGGTGAGTGcgcagatggctgacaaggccaatccgtgcacggaagGCTAAATTAAAAGTGTACAACTCGAAGTGGACCCACTCGTTTCCCCTCGACACTGTTGGAACAAGTGGAGTTATCATCTGCCATGATAAGGAGAGAAACAGGAAATACCAGTTCCTGCTGAACATCCAGCTGTCGAGTCTGCGTCTCACAAAGATCGTCACCATCATGCCGTACTTTGTGATTGTCAACAACACGGTGCATGACCTGCGGTACATGGAGGAGGACGAGCAAGCTGACCTGTGGCTTGACATCACTCCACAGCAGTGTGTGCCGTTCTGGCCAGTGACCGACTCATACAGGATGTCAGTGAAATACCGAGAGAGCAACGTATGCTCCGCTCACTTTGACGTCAGTAAGTCTCACCAGACGGTGCTGCGTATGGACCGCGGGACTGCCCTGTGTGTGGAAGTGGTGGGCGGCACAGACACCTCGGTCACCATCACCCTGTTGCCCTACGACCATGGAGACGCCCCAGTGAGGATGGAAAATCTCTGTGATGACGTCTTCATTAAACTACATCAAAAGAACCAGAGCCAGGTGTCACTGCTGTCACCCAACCAATCGGTGCTGTACACGTGGGACAACCCAAGCACTGAACGCACGCTAATGTGGAATGTCTACAACAGGAAGAAGCCTAGCTACCCAGCATTCATTGCAAAGGATGGATTTGGCAAAGTGGCCCTCAGTATCCTGACGATAAAGAACATGCAGCGAGTGACAGACAACAGGAATGGAGTGGAAGACAGCACCGATGATGAGGACAGTGAAGTGGAGTCTTCGAAGACCCAGTTGGTGAAGAACACTAGGATGGACAAAGTGACCGTCTACTGGGTTTCGTATCTTGACCGTCTACAGCGAGTCTTGTTGTTCACGCAGGACGAGAGAGTCGCCAAGAAAGTCAGGAAGGTTAACGAAGCTGAGCAAGCAAAGACCGCTGTCTTTCTGTCACTCGGTGGCATTGGCATGTCACTCATCAATGGACGATGCGAGGAGGTTGCCTACGTGACCTTGTCGAGCAGTGCTGCCCTCTGGGAGGTCGAGATGCGAAACAAATGGAAGACGTTGAATATGGAGCTGGCATCATGGCTTGAGGAACAGTGGTCCAAGAACGTCACCAACGTCACCTTGGAGGACGTCATGCAGGCTGACCTGCAACACATGGAGATGAAGAAACCCTTTGTAGGGGCATTGAGGAGGGTGTATAACCCTGCCCTGTGGGTGCAGTATCGGCAGTCAGAACACCACACATACCTGCATGCACGGGTACATCGATTGCAGATTGACAACCAGCTGACTGATGCCTACTTCCCCACTGTGCTCTTCCCAACCCCTCTTCCATCCTACGCTGTGAAGAAAGCGGGCCCCAGACCTTTCATTGAGATGATCGTAGCAAGGCATCAAGTGCCAGAGCAGAACATTGATACTTTTAAGTATGTCAAGGTCCTTCTACAAGAGTTGAGTCTACAGCTGGACAAGGGCTTCATTCTGTCCTTACTGGACATTTTCTCTGGTCAACAACAGGCCCAGAAGGAGAGTGCTCAGCTGCAGGCGGATCTGACAGTGGCTCGACGCAGTCTTCGTGACTTGGCAGCAGTCCAGGTGGCCGCAAAACCTCAGAGGATCTTGTTTGAGTATCTCCACCTCTCTCCAATCAAGTTGATGTTGAGTTTCTCGCTGGACGGCCGTATCCACCGTGCCTCCAAGCCAGACTCCATCAGTGCAGACATCATAGAGTTCTTCCTCACCTCGGTTGGAGCCACCATCACAGAGATGAAGGATGTTGAGCTCAAGATGGCATTCTTTGAGCGGCAGGGAGTGCTCCTGACCTTTGACCAGCTGGCCTCAGAGGCCAAGGGTCACTACATCCTGCAGGCCGTGCAGCAGGCGTATGTGTTTGTGCTGGGCCTGGATGTCCTGGGAAACCCCTACGGACTCGTGAAAGACTTCACAAAGGGGCTCGGCGACTTCTTCTATGAACCCATGGTGGGAACTATCCAAGGCCCAGACAAGATTGCTGAGAACTTGGTGCGAGGAGTGCAGAGTCTGATGGGACATACTATAGGGAGCATGGCTGGGTCTGTGTCTCTCATCACCGGCTCCCTTGGGAAGACACTCGCTGTCTTGTCTTTTGACAGCGACTACAGAAAGCGGAGACGGCAGTACATGCAGCAGCACCCTGCTCATCTACCCCAGAGCTTCTACCTCGCTGGACGTGGCTTTGTCATGGGGGTCGCCCTTGGTCTGTCGGGGGTCATTGTGCACCCCTTCAGGGGTGCCCAGGAAGAAGGGGTTGAGGGATTCTTTAAGGGTGTTGGGAAGGGTCTCCTTGGGTTGATCACAAAACCACCAGGGGGCACTGTTGACATGGTCAGCATGGCATTTGACGGCATTCGAAGGGCTGCAGAGATGGGTGAAGACGTGATCATCAGAATGAGGCTACCTCGGTACATCAGTCCATATATGGGCCTGAAACCTTACTCACCCTATCAAGCGGTTGGTATGAGAATGCTCAACAATGTGGCCAAGGGAAAGTTTGCAAAAAGTGACATCTACTGGGCACATGCTGCACTAAACTCTGATGATCGGGCAGATGTGGCGCTAGTTAGTGACAAGCGTGTCTTGCTGCTGGGGCGGTGTAAGTGCTGGGGTGACTGGGACGTAGAGATGGACGTTCCCCTGGAGGACATCATGGCTCCCCCTGCTGTCACTGACAACAGGCTAGTCTTCCGAGTGCGTGAGGGTGCTGGGTTCAACCTCATCACCAGTGGCGAACGGGCGATTGCCAGTGACGATCACTCCGTGTTACTATGGTTACAGAAGAAGATTGAGAAGGCCATGAACTTGGACCTTTAGGgaccaaataaaaaatgtctggCAATTCATAGTAATTTATATAGCAAGTTACTGGTTGATTACGTTGAATGTTTCCCGATATAAATTCCACATTCCACAGTTACAGCTTAGATTGACTGTCATTTATTTGGGCTGCCTTTTTCTTCAGGGTTTTCTGAAGTAAACAAGATTGTGTGGAAAAGATGAAAACTAAGCTTAAATACTAATCATTTGGTCAAACTATGATGTTTATGAAACATAGCATTTGTTGTAAAGGAGGCCGTCATTTGTTGAGATGTGCAATATTAGGGTGTTGTATAATTTGACAAAGGTGAACAATTTGCTCACCCACATAATGTGGGCCAATGAAACGTAATTTTTAACCACGATCACCGCCAACAAAGAACAACGCACCAGAAAGGTCTCATTTCATGAGCATATGTCAGTTTGATTTGGGTTTAAAGTAGCACTGTTTCTAAGCAGTGGATTGAGTTTGGTAAATGCAGCATGCATTTTTGCAGTTTTATTACTTCTCAAGGGAACAATCTGAGACTACATGTTGTAGGACCAAACTTACTGGaaattcacataaaaaaaattctaggtGACTTAAAATCACTAAGTTCTAACTGTCGTGAAATTTACTGTGCTCGTATAAGTTCAAGATGTTGAAAGGTATTTGTCTAACATTCATTCTAGCCTTGGTCaaagaaaatataaaatatatgttgttaaTAATTGTAACTATTCTATGTAACTAATTACTCTGTGTAGATAAGGTAAGGCAAACATTAGCCTCAGGatgtgtaaattattttgttttaactgACATCTTATTAATACAAGCGGCTAGTCATAGACTGACATACAAACAGAAGACTACCAACTTAGAGATTTCAGACCGTGTGATAGAATCAACCGGGTTAGATAGCAGAATTAGATAAGAATGCAATAAGCTTTCGTGGCGTGTTCTCCAAGAAGGTTGTTGTTAGAGGATACAGGTGTGTAGGCTGTGTATCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06650	VPS13_VAB	Vacuolar-sorting associated protein 13, adaptor binding domain	Domain	Interproscan
PF16909	VPS13_DH-like	Vacuolar-sorting-associated 13 protein, DH-like domain	Family	Interproscan
PF21679	VPS13_C	Intermembrane lipid transfer protein VPS13, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009543	Domain	Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain	Interproscan
IPR026847	Family	Vacuolar protein sorting-associated protein 13	Interproscan
IPR031645	Domain	Vacuolar protein sorting-associated protein 13, DH-like domain	Interproscan
IPR049424	Domain	Intermembrane lipid transfer protein VPS13, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16166	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006623	Biological Process	protein targeting to vacuole	Interproscan
GO:0019898	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053	Biological Process	protein retention in Golgi apparatus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-