Gene detail

Detailed information of CsqKR_Scaf98_22.38 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf98_22.38	G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN	chr7	35643709	35658652	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf98_22.38

ATGCCATATAAGCCATCATCATCATCATCATCATCATCATCATGTCCCGCAGAGACTCGGACACCGGGGCGACGTAGCTATTCTGAAGATGTTGCACCAGCAATTGGCTTGGTGTTGGCTCAGCAACGAAATGAATTTCGTACACGTAAGCAAAACATCACAGCGGAAGAGGCGAGGGTGGAGCAGGTAGTCATGTCTGTTATGAAGCAGTACGTGATATGTCCTCCCCAGTGGACGCCAGGGGTGGTTCCAGGGAGGGGTAATGTCTGCCTGAGACTTGAGACATCGAGAAGAGAATCTTGGGAAGACGCCCAAGAAGTCTGCAGACAGGACAGAGGATTTCTTGTAAACCTCCTGTCAGATTTTCGTGTAGGACCTTTTACCGTGAACAAGCGTATGAAAGATTTAGGTGTTCGCACATTCTGGACAGGAATGCATGTAGCTGATTCTAAGTTAGTTTGGGATGAAAGACGTCCTTCAGTTGTGCAGACGACAGCTCGACAGCTCGAAGGTTTGGAAAAGGTGAACGGAAAGTGGACGTGGAATATAACAACAGAAGATGTTGAAGATTCTTGCGGGATGGTTTTTCTGAAGGATAATAAACTGACAAGAAAGGAAAGATCTGACGGTAATGCTCGACCTCTTCGAAGAAAACAGAACTTATTTGACGGAAACAGCCGAAAGATTGGCGAAAATAACCGAAGTTCTGACAGAAACAAGAAGAGATCTGAAAAAAAACCCCGAAGATTTGACGGAAAGAACCGAAGATTTAATGGAAGCAGGCAAAGAATTGTCGGGAACAGCCGAAGAGGAAGCGGAAATAGACGACGATTTAACGGAAATAAACGACCATTTCGCGGGTCTGCAAAGTCTTCGGGTGGAAGGAGTCGATGGTGGAACCGAAGGAAACGGCGATCAGACGGGTCGAAAATGTCGATGGTATTTCCTAACCTGGGGGACTTGGAAGATCACTTTAACAACCAAGGAGACCACGATCTACCCGAGACGACAAATCCAAACTTGATGTTTTTACCACAGATGGGAAGTAACTCCAAGGCGACATACATTACTCAGTTCCTCAAACAACAGCTGGAAGCCAGGAAGGCAATCGGTAACCGTCAGATAATGAATGGCGTCAGAGTTTCCCCGACAGTCACCAGAGTTACAGTCACTACTACTACTGCTAAAACAAGTGCTGAAAATCTGAGTGGGATCACGACATCAGCGTCTTCAGTAAAGACTGATCAAACACGAACAGGCGAAACAACGACAGCGTTCAGAACAACGTCAGCCTCGGAAAATGCGACTTCAGATTCTGATTCTGTTGAAATTAGTGATAACTCGACAAACAGCCAGGAAGGGTCTTTAGAAGACACAGATTCAGACAAGAATACAACATCAACATCCACAACAACTACATCCGAAATATCTAAACCAGCTACGTCAGGATCCAAATCATCGACAACTGTTACATCGTTTACACCATCAACGTCAACATACAAAACATCAACACCTTCAACGTCTGCATCCACAATGCCTGCGCCCATCACGTCTGTATCTACAACGTCTAAGCCCATCACGTCTCTATCTGAAACATCTCCATCAACTACGTCTACATCCAAAATATCGACATCAATTAAATCGTCTTCTCACAAAATATCTACATCAAAAATGTTGACAGGATCAAAAACGTCAGTACGATTCACACGTTCACATCGTACAAGTCGTTCTGTAACGTACTCGTCTCCTTCGCCATCAGATAATACACCTACAGTCACGACGTCGCCTAGGGCTAAACCTGGACCTCCAACCACATCTTTTACACCATCTACACTGACAACAACAGCTTCCACGACATCGACTACAAAATTGACTAGTTTTCCAGATTCTGGAAATAAAGGAAAATCAGAATCAACAGTTAGTCGAACGAATCCAGAATTATCAACTCCAACAGCAACGTCATCAACAAAACAACACATCCAACGTGGCCCTTCCAGCACTGCTGTCGCAACAGATTCTGAATCTGCAGCTACAACGGACTACATCAAAGAATTAACAAAACGAATCGGGATCTCGAAATCACCATCCAGTGGAACGAACTCAAAAACAACGATCACAACAACGACATCATCAAATAAGTACATCCAGCCCGGTTCGTTCACTACTCGTGTCCCCATAAACCACGTAACTGCAGCTACCACGATGGATTACCTCACAGAACTGACAGAAAGACTCGCCTTCACGAGATTACCAGTTCTACCAGACGAGATGGAACCGATGATGACGCTTGAAGATTGCTCAGAAAAACACCCATTTGTCTGTTACAAACAACCAATCAGATCCCTGGGCGAAACTTCGCTGTGTGGGGAGCGGTGGATGGGACACACAGACATAGACAGGTGTTACATGGTGAACTCCCTACCCCTGCCTTTCCACCAAGCACACACAGTCGCCTGGGTTGACTTGCAGTACACAGCTGGTATCATGTTAAACAACTGTACGTATCTGGATCACTTCACGGTAAAGACGTCGTCATGTGACAATCTGCTGCCAGTAGTTTGTGAGAAAAATACGTTACCTAATCATGAACAAGATAAATTTGTTTCTCTGTTTGACGACGACGACGACGATGTTGAAGTGAGAATGATGCAGTCAAAGAGACCGGAACCTCTCTCTTGTCCCTTTGTGATCAGTTCACCGGAATCGGAAATCACGTGGTATAAAGATGGCGTCGCAATTCCCCCGTCCCAAAATCGCTTTGGAGAAACAGTTAAAGACGAAAAACTACAGCTGGATTCTGGTATGATGAAACGTCTTGAACAAAGTCACGGCGGAGTTTTCAAAATGGCGATGCTGCAGGGAGTCTACTGGTGTCAAATCTGGCTGAACGAAAGTTTCACTGCAGTCAAATCAAACAAATCTTTTGTTGTCTTTGATGATGTTGTTAGTCTATACGGCGTCGTTAAAACAAAAGGTATCTCACTGTACGACATCATCCTGCTCAACTACATGAACACCGTCACCGGCATACCACTGATAATTTCACATGGTATTGAATCCATCAACGACAACGTCACCAGATCATTACAACAACAGTACCCTGCTTTGACTGAGATAGACAGTGTAGTTAAACGAATCGAACCTGATACACATGAGATAGTGTTTTACACGTACCTGACTCTGAAACAAGTGATTCCAGAAAACATGAAAACAAAATTAATACAGTCTTACCTAAAGATGTTCCAGTCTGTTCTAAGTGTGAATGACTTCATGATCTCCCGAAAATGGAACGTAGAACAACCAGTTGTCAACAATATAAACATCAGCAGAACAGATGCTTGTTCTCGAGCTGTGCTGACAGACGAAGTCACAGGTTACCGAGCTTGGTTTCCGGTCACGCGAGTAGGACAGAACACGTTCAGTGAGGAAACTTGTGATGGCGTTGATCATATTGGCTTTGCTGTCTGCAGTGGAGATTACCAGAATGGTGCACACTGGGATTCCTGGAGTGTCACGTCAGAATGTCAACTGAAGGGCGTCAGTCCCACAATACCGAGCGAATTTCAAACAATACTTCCGGAGTTCTACGAGCTTCCAAAGAAATCCTTTGCTGACTTGGATGAGATGACAATCGACGATACTAATGTTGTGGAGGTGTCAGACAAATTGGCAGACATCTTGGAAAAAACTAACGAGCTGACAGGAGCAGATATTGACGTATGTGCGCACGTCATTGAACGTATTGTCGCAGTGAACCCGAGGTCGGATCAGGTTGGAGTTCCCCTGGTTTCCTCTGTCAACAAGATTCTGGACGTGGGAGGGGACGCCATTGAGAAGGCGGAGAGAAACACGAAGGCAGCGAGCTCGATTATCGGCACGATGGAAAGATTCGCCATGAACTCGAAACTCGGAAATCCGGGCTATTTTCGTATCGTTTCTCCAAACATCGCAGTAGAAATGTGGGATCTTCAGCAAGGGATGAGACCCGTCATAGGACTGGGGGCGTCTGTGTCTAACGACTGGAGCACCCCCTTGACCACACCTCGCATCCGCACCATAGTGGACCGTTCTGATGACATGTTCTTAGCCTTTGATGTGGCGATAGAGTTACCTGTAAAACTCGTACAAGACGAAATTACAGCTAACACAAACAGCACTCGCCTGTCCATGGTGATATACAGAAAAGTGAGTCTGTTCACTTCAACTATACCTATGTCCAACGTCAGCCAAGATGTCATCAACAGTGCCGTCATAGCTGCTAGCCTGGGCGGCAAGAAGATAGAAGGTCTAAAAGACAAAGTCCGCATGATTTTCAGACCTTTCAAAGATTTCTATGGTAACCGGATGCCAATAGCTCCTGAACACGAGTTGTCTCTGAGTATCATCACGCTGGTGGGACTTAGTTTGTCGATCCTGGGACTTTCTTTAACTATCGTCAGTTTCATCTTCTTCAAGAAGTTACGTAAAGGCCGCGCCCAGCTGACTCTATTCAACATGGCGCTTGCCCTGGTTGCCGCGAATCTGGTGTTTCTGATTGGAATCAAGCAGACGTCAAACTACGTCGTCTGCCTTCTCGTGTCCATTCTCTTACATTACCTCATCCTCGTCGCTTTCATGTGGATGTTGATTGAGGCAGTGTTGCAATATTTCACGTTCGTCAAAGTCCTCGGGTCTTATATCTCTAGATACTCTACTAAGACGTTAATATCTGCCTGGGGACTCACTTGGGCGTTTGGGTATCTCGCCATCGATGACGCGCGACTCATATTCCAGTACATCTTCACCTCTCTCAGTTCTCTTCAAGGCTTCTTTATCTTCGTACTCATGGTTGCTAGGCGACCGAAGGTTCGCGAGCAGTGGCGAGCCGTCTGCTGCAAGACGTCAGAGAAAGACGGACGCACAAAGACTATGTCACCTACAATGAGCAACTCTGCGTCATCGCGAGGTTCTGACGCGTCATCGCGCAGTTCTGACGCTGGAACGCGCGGGAAAGGCAGCACGCGGACTCTCGTGGGATCGATCTCCGTCAGTTCCACGTGCAGCAGCGGCAGTTGTTTCGCTGCCAACAGCTTCGTGAATCGAGCGTTTAACGACGGCTTCGACTCTGTGTACAACGTACATTCGCGCAGAAACAGTGCGCCGTATGCAAATTTACAAAACAAGCCTTGTGATTCATTTAAGAAATAA

Transcript

CsqKR_Scaf98_22.38

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000832	Family	GPCR, family 2, secretin-like	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR017981	Domain	GPCR, family 2-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45692	G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf98_22.38 global RNA-seq network