Gene detail

Detailed information of CsqKR_Scaf80_4.29 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf80_4.29	FLAP ENDONUCLEASE FAMILY MEMBER	chr1	21856428	21862776	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf80_4.29

ATGGGCATTCAGGGACTGTTGCCTTTCTTGAAGAAACTTCACACACCAGTAAACATAGCACAGTTCCAGGGTCAGACGGTGGCTATTGATGCATATTGCTGGCTGCATAAAGGTGCATTTTCCTGTGCTGACAAACTGGCTTTGGGGGAACCTACAGATCAGTATGTCTACTTCTGTATGAAATATGTAGAGTACATGTTAAAACATGGACTAAAGCCTATCTTGGTTTTTGATGGCTGTCATCTTCCATCCAAGAAAGGTGTTGAGAAAGCTCGCAGAGAGCGAAGAGAAATATACAAAAAGAAAGCTGCTGTGTTTTTACGTGAAGGAAAACGTGCTGAAGCTAGAGAATGTTTGCAGAGGTGTATAGATGCCTGTCACCATAGAGGTGTTGACTGTATTGTTGCTCCTTATGAAGCTGATGCTCAACTAGCCTATCTTAACAAGGCTGGAATAGCACAAATCATAGTTACTGAAGATTCTGATTTGTTACTTTTTGGTTGTGAGAAGATCATTTTTAAAATGGACTTCAATGGCAATGGGCTTTTAGTGGAAAAAAATCGGCTGAATGAAGCACTGGAGATTCAGAATGGTTTTTACAGCTTTGACAAGTTCCGTTATGCATGTATTTTGTCTGGTTGTGACTACCTGCCCTCATTACATGGAATTGGATTAGTAAAAGCAGTGAAAGTGTTCAGATCTGCTCGACAAACTGACATTAAACAACTGCTGAAAAAACTACCTGCTTATATTAAATTAAGGGATGATATTCCTTCGGATTATATTGATGGATTTATTAAAGCAGATAACACATTCTTATACCAACTGGCTTTTGACCCATTGAAGCGGAAATTGGTTCCTCTGAATCCTTATCCACCAGAAATGGATTCTTCAGAATTAACATATGCTGGACCTCAGTTACCAGATGATCGTGCTTACCAGATTGCTCTTGGTAACATTGACATTAACAGTGGTCAGAAAATTGGTGACTTTGATCCAGACAACTTTCAGCCAAACAAATGCAGAAAAAATAAGTCTGAACATCTTTACATGTTGAGTATGTGGGATAAAAATTACAGACCAATGCCAAAGATTGGCTTGAAAGAAATTCAGCCTGCAGAAAGACCTGTATTGAAGGGAAAAGAGAAAACAGTTGAAACTAAAATTGTTAAAAGACCAAGAGAAATAGAAGATTTCAAAGATGTTAAATCTGACACTGAACTTGGCAGCCTTTATGATGAACTTTCACCAGCAGCAAAGAGACTAAAATCTGAAAATATCCATGATAAAAGTGAGACAAATGATGATCCATTAAGTGATGAAGATTCTTCATTTGCCTCTGAATTGTCAGACATAAAAGCACCTTCACCCGAGACAAAATCAACTCTATCTCCAGATCAAAAAAAACAACTGAGTGCAGCAGACATTGGTGAAGTTGTCATGAAGATAGAGGAAAATAAAGAAAATATACATTTGAACCCAAGAAGAAATAAATTTGCTGTTTCGTCACTGGTGAAGAGGAAATTTAACCTCAATGCTTCCAAGACAGATGTCACAGTTCGTAGCAGGTTTTTTGCAAAGTCTGAAGATACCTCCGATATAAAAAGTGAAAAGGTGGATAAAAACAAAGAAATGACTGCAGAATGCATAATGAAGACAGCAGACTATTCAGATGTTCATAACAAATCAGGGGCTAATGAATCACCTTCAGAGAATTTAACCACTGATATAAACAGCATTAATTTATCTATCAGTACATCAAAGAAGACTGAAAATAATCATCACTGTTCATCAACTGAATCTCCAAAACACTCTCCTAGTTCAGCCTTTAGCTGGGACAAATTTAAATATGGCCAAAGCAAAACATCTGCTAAATCAACTCATAACACAACCCACTCATCAGCAAGCAAGCAATTTAAACCTGTAATCTCATCTCACAGAAAAAGTAGTGATTTTTTTACACCATTTATGAAGTCAGGATCTGGTGCCAAAATAGAAAATACTTCTTTAACTTCAACACAGTCTGAAAGTACCAAAATGGATTCTGAAGAAAATATCAGCGAGTTCTTGTCTTCATCTGGGAAGTCTGTGACAAATACCTTTTCCTCTAATACATTGGTAACTGAGTTTGATACAATTGAAACAAAAGCCAGCTCACAGAAATCTGACACAACTTTGAGTGCATTGACTAGTTCTTTGCTTAATTCCTCAGGAGAATCAGTAATTGATTATGAAAGTTTCAGTCAGAGATCAAACTTAGAAAGCATAGATTCTGACTTCATGTCCAGCCAAGATATTATAGATCTGACTGATATAGATGAAGACGAACAAATTACTTTAAAAAAAAATACACCTCTATCAAATTGTGAGAAGAAAATCTGCAGAGTTTCAGGACTTTCAAGACCATCCAGTAAACAAACACAGAATAAAAGTTGTTTAGAAAATCAGAAAAGTATAAAGGATATGTTTTCAAAATTTGCTTTGAAAAGGCAAAGGGAAAAGTTACAAGCAACCAGTCTAATTTAG

Transcript

CsqKR_Scaf80_4.29

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00752	XPG_N	XPG N-terminal domain	Family	Interproscan
PF00867	XPG_I	XPG I-region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR006085	Domain	XPG, N-terminal	Interproscan
IPR006086	Domain	XPG-I domain	Interproscan
IPR008918	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR019974	Conserved_site	XPG conserved site	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR037315	Domain	Exonuclease-1, H3TH domain	Interproscan
IPR044752	Domain	Exonuclease 1-like, PIN-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0035312	Molecular Function	5'-3' DNA exonuclease activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf80_4.29 global RNA-seq network